Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 AC126444.1-201ENSMUST00000225938 1768 ntBASIC15.24■□□□□ 0.03
Scn11aQ9R053 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Rmrp-201ENSMUST00000157463 271 ntBASIC15.24■□□□□ 0.03
Scn11aQ9R053 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Gm42937-201ENSMUST00000197360 752 ntBASIC15.24■□□□□ 0.03
Scn11aQ9R053 Rprl1-202ENSMUST00000198476 238 ntBASIC15.24■□□□□ 0.03
Scn11aQ9R053 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Gm8913-201ENSMUST00000209491 641 ntBASIC15.24■□□□□ 0.03
Scn11aQ9R053 AL732506.1-201ENSMUST00000226420 281 ntBASIC15.24■□□□□ 0.03
Scn11aQ9R053 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Scn11aQ9R053 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Scn11aQ9R053 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Gzmn-202ENSMUST00000225535 989 ntBASIC15.23■□□□□ 0.03
Scn11aQ9R053 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Gm10710-201ENSMUST00000047876 3971 ntBASIC15.23■□□□□ 0.03
Scn11aQ9R053 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Scn11aQ9R053 Gm6210-201ENSMUST00000204734 1942 ntBASIC15.22■□□□□ 0.03
Scn11aQ9R053 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Gm2673-201ENSMUST00000120958 1608 ntBASIC15.22■□□□□ 0.03
Scn11aQ9R053 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Tuba1a-201ENSMUST00000097014 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Gm13047-201ENSMUST00000117116 815 ntBASIC15.22■□□□□ 0.03
Scn11aQ9R053 Gm5638-201ENSMUST00000118618 1258 ntBASIC15.22■□□□□ 0.03
Scn11aQ9R053 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC15.22■□□□□ 0.03
Scn11aQ9R053 AC154222.2-201ENSMUST00000225848 607 ntBASIC15.22■□□□□ 0.03
Scn11aQ9R053 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Scn11aQ9R053 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Gm14999-201ENSMUST00000121039 624 ntBASIC15.21■□□□□ 0.03
Scn11aQ9R053 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Scn11aQ9R053 AC122197.2-201ENSMUST00000219196 1635 ntBASIC15.21■□□□□ 0.03
Scn11aQ9R053 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Scn11aQ9R053 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms