Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Gm12363-201ENSMUST00000122250 668 ntBASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Gm26185-201ENSMUST00000157692 266 ntBASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Gm5896-201ENSMUST00000189662 1024 ntBASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Gm37042-201ENSMUST00000193816 581 ntBASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Gsg1l-201ENSMUST00000073935 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 CT025610.1-201ENSMUST00000224552 1786 ntBASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Cpsf3Q9QXK7 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Sumo3-206ENSMUST00000141228 772 ntTSL 3 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Gm4768-201ENSMUST00000206199 686 ntBASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Gm19163-201ENSMUST00000223313 780 ntBASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Gm12846-201ENSMUST00000120431 1373 ntBASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Ankrd61-203ENSMUST00000110718 1774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Mfsd4b4-202ENSMUST00000178563 3523 ntTSL 5 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cpsf3Q9QXK7 Hdac5-203ENSMUST00000107151 4852 ntTSL 5 BASIC14.02□□□□□ -0.16
Cpsf3Q9QXK7 Prrt3-202ENSMUST00000204134 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cpsf3Q9QXK7 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cpsf3Q9QXK7 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cpsf3Q9QXK7 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Cpsf3Q9QXK7 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cpsf3Q9QXK7 Phf24-201ENSMUST00000069184 6392 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Cpsf3Q9QXK7 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Cpsf3Q9QXK7 Nkain3-202ENSMUST00000119374 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cpsf3Q9QXK7 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC14.02□□□□□ -0.16
Cpsf3Q9QXK7 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Gm5187-201ENSMUST00000117317 991 ntBASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Gm12742-201ENSMUST00000117326 410 ntBASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Mbp-205ENSMUST00000091789 4797 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Cpsf3Q9QXK7 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 102.9 ms