Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Scn4aQ9ER60 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Fam114a2-202ENSMUST00000108850 1765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Gm13286-201ENSMUST00000117750 537 ntBASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Gm23675-201ENSMUST00000157311 125 ntBASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Gm45481-201ENSMUST00000209717 877 ntBASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Gm23680-201ENSMUST00000083162 164 ntBASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Scn4aQ9ER60 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Gm26286-201ENSMUST00000104166 134 ntBASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Gm12419-201ENSMUST00000116649 636 ntBASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Rpl41-201ENSMUST00000176010 582 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Rpl41-204ENSMUST00000176906 509 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Mrpl30-207ENSMUST00000195373 587 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Mir326-201ENSMUST00000083637 95 ntBASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Scn4aQ9ER60 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Gm43447-201ENSMUST00000198471 1535 ntBASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Rpl23-201ENSMUST00000103146 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Gm25766-201ENSMUST00000104101 131 ntBASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Tcf7l2-204ENSMUST00000111649 982 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Uckl1os-207ENSMUST00000152365 442 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Gm45135-201ENSMUST00000206787 1184 ntBASIC17.32■□□□□ 0.36
Scn4aQ9ER60 4930543N07Rik-202ENSMUST00000209503 1117 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Gm44094-201ENSMUST00000204703 2030 ntBASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Gm45342-201ENSMUST00000210903 1363 ntBASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC17.32■□□□□ 0.36
Scn4aQ9ER60 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Gm23255-201ENSMUST00000102244 110 ntBASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Gm11502-201ENSMUST00000120917 1211 ntBASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Trub2-210ENSMUST00000177467 744 ntTSL 3 BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 AC134860.1-201ENSMUST00000224867 660 ntBASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 AC164107.1-201ENSMUST00000227730 2161 ntBASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Scn4aQ9ER60 B230110C06Rik-201ENSMUST00000181388 1274 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms