Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Kdm2b-202ENSMUST00000046073 5180 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Fosb-203ENSMUST00000207716 3546 ntTSL 5 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Fosb-207ENSMUST00000208505 3523 ntTSL 5 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Ddx28Q9CWT6 Gm42690-201ENSMUST00000197921 1836 ntBASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 CT025624.1-201ENSMUST00000224007 2700 ntBASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC12.27□□□□□ -0.44
Ddx28Q9CWT6 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 D11Bhm181e-201ENSMUST00000122252 282 ntBASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Golga4-201ENSMUST00000084820 7583 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Ddx28Q9CWT6 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 AC139350.1-201ENSMUST00000227064 1594 ntBASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Pou4f3-201ENSMUST00000025374 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Pebp1-202ENSMUST00000111973 779 ntTSL 3 BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Gm5626-201ENSMUST00000222151 1058 ntBASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Ddx28Q9CWT6 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 71.9 ms