Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msh4Q99MT2 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Foxb1-201ENSMUST00000071281 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Podn-201ENSMUST00000044248 2885 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Msh4Q99MT2 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC12.74□□□□□ -0.37
Msh4Q99MT2 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Mapt-201ENSMUST00000100347 1362 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 St6galnac6-209ENSMUST00000131229 1013 ntTSL 2 BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC12.74□□□□□ -0.37
Msh4Q99MT2 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Gm27839-201ENSMUST00000184242 106 ntBASIC12.74□□□□□ -0.37
Msh4Q99MT2 Gm29608-201ENSMUST00000190444 463 ntBASIC12.74□□□□□ -0.37
Msh4Q99MT2 Gm7287-201ENSMUST00000205267 602 ntBASIC12.74□□□□□ -0.37
Msh4Q99MT2 Tm2d3-207ENSMUST00000206517 905 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Gm7067-201ENSMUST00000207698 1249 ntBASIC12.74□□□□□ -0.37
Msh4Q99MT2 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Ppp1r14d-201ENSMUST00000076084 787 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Mtch2-211ENSMUST00000150232 2377 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Msh4Q99MT2 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Ntng1-208ENSMUST00000133268 5587 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Msh4Q99MT2 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm14127-201ENSMUST00000117906 678 ntBASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm12537-201ENSMUST00000119266 1002 ntBASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm12070-201ENSMUST00000119551 1002 ntBASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm12671-201ENSMUST00000119978 1002 ntBASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm13292-201ENSMUST00000120014 1000 ntBASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm12403-201ENSMUST00000121384 959 ntBASIC12.73□□□□□ -0.37
Msh4Q99MT2 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm10359-201ENSMUST00000180167 1002 ntBASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm12033-201ENSMUST00000180654 1002 ntBASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm5559-201ENSMUST00000180755 1002 ntBASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm4335-201ENSMUST00000182581 1004 ntBASIC12.73□□□□□ -0.37
Msh4Q99MT2 AC110817.1-201ENSMUST00000225706 605 ntBASIC12.73□□□□□ -0.37
Msh4Q99MT2 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Msh4Q99MT2 As3mt-201ENSMUST00000003655 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.73□□□□□ -0.37
Msh4Q99MT2 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Msh4Q99MT2 Gm29455-201ENSMUST00000186504 2659 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms