Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Gm12384-201ENSMUST00000119228 919 ntBASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Gm24644-201ENSMUST00000157114 139 ntBASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Gm10040-201ENSMUST00000080726 1662 ntBASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Ushbp1Q8R370 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Adat3-201ENSMUST00000178231 4516 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Riox2-203ENSMUST00000120674 1753 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Gm13612-201ENSMUST00000119276 390 ntBASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Gm12329-201ENSMUST00000120829 1007 ntBASIC14.66□□□□□ -0.06
Ushbp1Q8R370 A330102I10Rik-202ENSMUST00000140415 682 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Gm24196-201ENSMUST00000179161 110 ntBASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Psmc3ip-201ENSMUST00000019447 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 9130604C24Rik-201ENSMUST00000197965 956 ntBASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Gm7172-201ENSMUST00000218047 1152 ntBASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Gstt2-203ENSMUST00000218500 794 ntTSL 5 BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 AC153144.2-201ENSMUST00000221766 451 ntTSL 5 BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Gm9947-201ENSMUST00000067599 2920 ntBASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Ushbp1Q8R370 Srd5a1-202ENSMUST00000091514 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Gm43818-201ENSMUST00000200605 466 ntBASIC14.65□□□□□ -0.06
Ushbp1Q8R370 CT009713.10-202ENSMUST00000225734 696 ntBASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Supt6-201ENSMUST00000002121 6488 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Hk2-204ENSMUST00000170833 2792 ntTSL 5 BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Syt12-201ENSMUST00000059295 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Slc4a4-207ENSMUST00000148750 7931 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Ushbp1Q8R370 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 AC121805.2-201ENSMUST00000218808 2538 ntBASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Gm45643-201ENSMUST00000211364 1484 ntBASIC14.64□□□□□ -0.07
Ushbp1Q8R370 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Pcdha11-203ENSMUST00000192447 4583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Ushbp1Q8R370 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms