Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Gm10076-201ENSMUST00000073238 384 ntBASIC15.14■□□□□ 0.01
Nup98Q6PFD9 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nup98Q6PFD9 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Nup98Q6PFD9 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nup98Q6PFD9 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nup98Q6PFD9 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nup98Q6PFD9 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Nup98Q6PFD9 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Nup98Q6PFD9 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Nup98Q6PFD9 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Nup98Q6PFD9 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Nup98Q6PFD9 Rnpc3-202ENSMUST00000106535 2616 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Gm13296-201ENSMUST00000117854 997 ntBASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Gm12176-201ENSMUST00000121420 875 ntBASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 AC154305.4-201ENSMUST00000224520 614 ntBASIC15.13■□□□□ 0.01
Nup98Q6PFD9 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Gm44291-201ENSMUST00000203102 2865 ntBASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 AC238940.1-201ENSMUST00000225106 1858 ntBASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Gm44958-201ENSMUST00000203734 736 ntBASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Abhd11os-203ENSMUST00000222613 363 ntBASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Slc12a4-201ENSMUST00000034370 3811 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Nup98Q6PFD9 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 H2-M6-ps-201ENSMUST00000119193 1034 ntBASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Gm26361-201ENSMUST00000158868 186 ntBASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Gm37666-201ENSMUST00000194110 866 ntBASIC15.12■□□□□ 0.01
Nup98Q6PFD9 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 AC159205.5-202ENSMUST00000224849 386 ntBASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Gm10312-201ENSMUST00000078515 489 ntBASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Slc23a4-201ENSMUST00000044387 2175 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Nup98Q6PFD9 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Gm18626-201ENSMUST00000221512 1409 ntBASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Gm42840-201ENSMUST00000200303 2251 ntBASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Gpc2-201ENSMUST00000014089 2514 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Fundc1-204ENSMUST00000176638 448 ntTSL 3 BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Gm5070-201ENSMUST00000177599 862 ntBASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nup98Q6PFD9 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms