Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Gm11960-202ENSMUST00000181063 2858 ntBASIC19.61■□□□□ 0.73
Col17a1Q07563 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col17a1Q07563 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col17a1Q07563 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Col17a1Q07563 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col17a1Q07563 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Col17a1Q07563 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col17a1Q07563 Prr13-205ENSMUST00000171245 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col17a1Q07563 Gm25766-201ENSMUST00000104101 131 ntBASIC19.6■□□□□ 0.73
Col17a1Q07563 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Gm15566-201ENSMUST00000121130 590 ntBASIC19.6■□□□□ 0.73
Col17a1Q07563 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC19.6■□□□□ 0.73
Col17a1Q07563 Gm26647-201ENSMUST00000180816 1255 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 AC153954.1-201ENSMUST00000216959 255 ntBASIC19.6■□□□□ 0.73
Col17a1Q07563 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC19.6■□□□□ 0.73
Col17a1Q07563 AC165260.3-202ENSMUST00000224550 1031 ntBASIC19.6■□□□□ 0.73
Col17a1Q07563 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Arl16-201ENSMUST00000076921 911 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Gm10728-201ENSMUST00000194292 1829 ntBASIC19.6■□□□□ 0.73
Col17a1Q07563 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Col17a1Q07563 Golim4-208ENSMUST00000167078 2902 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Alkbh3os1-201ENSMUST00000028621 1549 ntTSL 5 BASIC19.6■□□□□ 0.73
Col17a1Q07563 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
Col17a1Q07563 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC19.6■□□□□ 0.73
Col17a1Q07563 Drd3-201ENSMUST00000023390 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Gm38102-201ENSMUST00000192791 1935 ntBASIC19.6■□□□□ 0.73
Col17a1Q07563 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC19.6■□□□□ 0.73
Col17a1Q07563 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Gm11619-201ENSMUST00000117474 237 ntBASIC19.6■□□□□ 0.73
Col17a1Q07563 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC19.6■□□□□ 0.73
Col17a1Q07563 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Gm12069-201ENSMUST00000145127 806 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Gm11634-201ENSMUST00000154147 755 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
Col17a1Q07563 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC19.6■□□□□ 0.73
Col17a1Q07563 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Col17a1Q07563 2310057N15Rik-201ENSMUST00000054223 1028 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
Col17a1Q07563 Tmem116-204ENSMUST00000111795 2221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Avpr1a-201ENSMUST00000020323 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col17a1Q07563 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Col17a1Q07563 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC19.59■□□□□ 0.73
Col17a1Q07563 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Art5-202ENSMUST00000106934 843 ntTSL 5 BASIC19.59■□□□□ 0.73
Col17a1Q07563 Gm14807-201ENSMUST00000116640 983 ntBASIC19.59■□□□□ 0.73
Col17a1Q07563 Gm14236-201ENSMUST00000142374 872 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC19.59■□□□□ 0.73
Col17a1Q07563 Gm6450-201ENSMUST00000200896 574 ntBASIC19.59■□□□□ 0.73
Col17a1Q07563 Gm33979-201ENSMUST00000219486 691 ntTSL 5 BASIC19.59■□□□□ 0.73
Col17a1Q07563 2010109A12Rik-201ENSMUST00000031330 549 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Col17a1Q07563 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col17a1Q07563 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col17a1Q07563 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Col17a1Q07563 Pxn-201ENSMUST00000067268 3706 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col17a1Q07563 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Col17a1Q07563 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col17a1Q07563 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Col17a1Q07563 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col17a1Q07563 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col17a1Q07563 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col17a1Q07563 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Col17a1Q07563 Gm45212-201ENSMUST00000205831 3403 ntBASIC19.58■□□□□ 0.73
Col17a1Q07563 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Col17a1Q07563 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Col17a1Q07563 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Col17a1Q07563 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col17a1Q07563 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Col17a1Q07563 Gm8731-201ENSMUST00000118088 412 ntBASIC19.58■□□□□ 0.72
Col17a1Q07563 Gm14004-201ENSMUST00000138875 590 ntTSL 2 BASIC19.58■□□□□ 0.72
Col17a1Q07563 Gm25226-201ENSMUST00000158198 123 ntBASIC19.58■□□□□ 0.72
Col17a1Q07563 7420461P10Rik-201ENSMUST00000169439 781 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col17a1Q07563 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Col17a1Q07563 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC19.58■□□□□ 0.72
Col17a1Q07563 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Col17a1Q07563 AC134860.1-201ENSMUST00000224867 660 ntBASIC19.58■□□□□ 0.72
Col17a1Q07563 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Col17a1Q07563 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col17a1Q07563 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.58■□□□□ 0.72
Col17a1Q07563 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col17a1Q07563 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC19.58■□□□□ 0.72
Col17a1Q07563 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Col17a1Q07563 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms