Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC11.29□□□□□ -0.6
Nkx3-1P97436 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC11.29□□□□□ -0.6
Nkx3-1P97436 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Gm17376-201ENSMUST00000166016 84 ntBASIC11.29□□□□□ -0.6
Nkx3-1P97436 Gm20482-202ENSMUST00000174729 825 ntBASIC11.29□□□□□ -0.6
Nkx3-1P97436 Mir3102-201ENSMUST00000175555 104 ntBASIC11.29□□□□□ -0.6
Nkx3-1P97436 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Gm37042-201ENSMUST00000193816 581 ntBASIC11.29□□□□□ -0.6
Nkx3-1P97436 Gm37466-201ENSMUST00000195692 652 ntBASIC11.29□□□□□ -0.6
Nkx3-1P97436 Gm5565-201ENSMUST00000199463 1162 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Nkx3-1P97436 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC11.29□□□□□ -0.6
Nkx3-1P97436 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Atp2a3-204ENSMUST00000108486 4540 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Wdr5-201ENSMUST00000113952 2890 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Gm6198-201ENSMUST00000191337 2929 ntBASIC11.29□□□□□ -0.6
Nkx3-1P97436 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
Nkx3-1P97436 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Gm25668-201ENSMUST00000157700 129 ntBASIC11.28□□□□□ -0.6
Nkx3-1P97436 Gm24548-201ENSMUST00000158650 108 ntBASIC11.28□□□□□ -0.6
Nkx3-1P97436 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Gm16570-201ENSMUST00000161951 436 ntBASIC11.28□□□□□ -0.6
Nkx3-1P97436 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Gm6082-201ENSMUST00000215204 454 ntBASIC11.28□□□□□ -0.6
Nkx3-1P97436 AC135669.1-202ENSMUST00000216742 540 ntBASIC11.28□□□□□ -0.6
Nkx3-1P97436 CT573034.1-201ENSMUST00000222983 313 ntBASIC11.28□□□□□ -0.6
Nkx3-1P97436 Morn2-202ENSMUST00000227729 656 ntBASIC11.28□□□□□ -0.6
Nkx3-1P97436 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Gm2237-202ENSMUST00000170694 2090 ntAPPRIS P5 TSL 5 BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Nkx3-1P97436 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Nkx3-1P97436 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Nkx3-1P97436 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC11.27□□□□□ -0.6
Nkx3-1P97436 Gm44207-201ENSMUST00000204568 1424 ntBASIC11.27□□□□□ -0.6
Nkx3-1P97436 Rims1-205ENSMUST00000097811 6446 ntAPPRIS P5 TSL 5 BASIC11.27□□□□□ -0.6
Nkx3-1P97436 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Nkx3-1P97436 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Nkx3-1P97436 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Cct4-204ENSMUST00000173867 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Nkx3-1P97436 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 50 ms