Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Gm10244-201ENSMUST00000090237 830 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Ptprm-203ENSMUST00000224091 3773 ntBASIC10.68□□□□□ -0.7
Sdc1P18828 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC10.68□□□□□ -0.7
Sdc1P18828 AC160410.1-201ENSMUST00000219298 1972 ntBASIC10.68□□□□□ -0.7
Sdc1P18828 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC10.68□□□□□ -0.7
Sdc1P18828 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC10.68□□□□□ -0.7
Sdc1P18828 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC10.68□□□□□ -0.7
Sdc1P18828 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Esco2-201ENSMUST00000022613 2913 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Sdc1P18828 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Fam206a-201ENSMUST00000045368 4275 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Gjb2-201ENSMUST00000055698 2406 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Sdc1P18828 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Ntrk2-202ENSMUST00000109838 6846 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Gm5053-201ENSMUST00000208361 1678 ntBASIC10.67□□□□□ -0.7
Sdc1P18828 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Vsx2-201ENSMUST00000021665 3270 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Gm37513-201ENSMUST00000194830 2268 ntBASIC10.67□□□□□ -0.7
Sdc1P18828 Gm38378-201ENSMUST00000195153 2268 ntBASIC10.67□□□□□ -0.7
Sdc1P18828 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC10.67□□□□□ -0.7
Sdc1P18828 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC10.67□□□□□ -0.7
Sdc1P18828 Gm6973-201ENSMUST00000117080 721 ntBASIC10.67□□□□□ -0.7
Sdc1P18828 Gm13036-201ENSMUST00000117799 748 ntBASIC10.67□□□□□ -0.7
Sdc1P18828 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC10.67□□□□□ -0.7
Sdc1P18828 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Plekhd1os-201ENSMUST00000153297 944 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC10.67□□□□□ -0.7
Sdc1P18828 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC10.67□□□□□ -0.7
Sdc1P18828 CT030684.1-201ENSMUST00000227292 914 ntBASIC10.67□□□□□ -0.7
Sdc1P18828 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Sdc1P18828 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Sdc1P18828 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Sdc4-201ENSMUST00000017153 2458 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC10.67□□□□□ -0.7
Sdc1P18828 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Gm7224-201ENSMUST00000121359 2066 ntBASIC10.67□□□□□ -0.7
Sdc1P18828 Phactr1-206ENSMUST00000131942 2056 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Gm43721-201ENSMUST00000199677 2313 ntBASIC10.67□□□□□ -0.7
Sdc1P18828 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Sdc1P18828 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC10.66□□□□□ -0.7
Sdc1P18828 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC10.66□□□□□ -0.7
Sdc1P18828 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Sdc1P18828 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Gm9025-201ENSMUST00000122415 1575 ntBASIC10.66□□□□□ -0.7
Sdc1P18828 AC113060.1-201ENSMUST00000225689 1573 ntBASIC10.66□□□□□ -0.7
Sdc1P18828 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC10.66□□□□□ -0.7
Sdc1P18828 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Sdc1P18828 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Sdc1P18828 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms