Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC14.14□□□□□ -0.15
RaraP11416 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Rnps1-202ENSMUST00000115371 1617 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Abhd6-203ENSMUST00000225234 1958 ntBASIC14.14□□□□□ -0.15
RaraP11416 Oprm1-214ENSMUST00000105605 1503 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Oprm1-201ENSMUST00000000783 1500 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
RaraP11416 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Arhgef2-219ENSMUST00000176500 4492 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
RaraP11416 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC14.13□□□□□ -0.15
RaraP11416 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
RaraP11416 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC14.13□□□□□ -0.15
RaraP11416 Gm12341-201ENSMUST00000119724 503 ntBASIC14.13□□□□□ -0.15
RaraP11416 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RaraP11416 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
RaraP11416 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC14.13□□□□□ -0.15
RaraP11416 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC14.13□□□□□ -0.15
RaraP11416 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC14.13□□□□□ -0.15
RaraP11416 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC14.13□□□□□ -0.15
RaraP11416 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC14.13□□□□□ -0.15
RaraP11416 Gm20554-201ENSMUST00000177421 2352 ntBASIC14.13□□□□□ -0.15
RaraP11416 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC14.13□□□□□ -0.15
RaraP11416 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
RaraP11416 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RaraP11416 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC14.12□□□□□ -0.15
RaraP11416 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
RaraP11416 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
RaraP11416 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
RaraP11416 Gm44985-201ENSMUST00000206202 1016 ntBASIC14.12□□□□□ -0.15
RaraP11416 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC14.12□□□□□ -0.15
RaraP11416 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC14.12□□□□□ -0.15
RaraP11416 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC14.12□□□□□ -0.15
RaraP11416 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC14.12□□□□□ -0.15
RaraP11416 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
RaraP11416 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RaraP11416 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RaraP11416 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RaraP11416 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RaraP11416 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RaraP11416 Olfr667-202ENSMUST00000217177 2695 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
RaraP11416 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
RaraP11416 Gm43463-201ENSMUST00000195967 1803 ntBASIC14.11□□□□□ -0.15
RaraP11416 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RaraP11416 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RaraP11416 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
RaraP11416 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RaraP11416 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
RaraP11416 Gm11978-201ENSMUST00000122315 466 ntBASIC14.11□□□□□ -0.15
RaraP11416 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
RaraP11416 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RaraP11416 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RaraP11416 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC14.11□□□□□ -0.15
RaraP11416 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC14.11□□□□□ -0.15
RaraP11416 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC14.11□□□□□ -0.15
RaraP11416 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
RaraP11416 Gm44855-201ENSMUST00000205725 362 ntBASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms