Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Gm10327-201ENSMUST00000105222 1002 ntBASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Smyd3-207ENSMUST00000194237 1047 ntTSL 2 BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 CT030657.3-201ENSMUST00000222707 1200 ntBASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Rnf10-202ENSMUST00000112096 3112 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Gm8775-201ENSMUST00000170943 1327 ntBASIC12.35□□□□□ -0.43
Trim3Q9R1R2 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Gm27196-201ENSMUST00000184787 2582 ntBASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Nop58-201ENSMUST00000027174 1713 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Gm12960-201ENSMUST00000120017 1066 ntBASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Gm15806-201ENSMUST00000120696 955 ntBASIC12.34□□□□□ -0.43
Trim3Q9R1R2 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Gm5519-201ENSMUST00000042061 513 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Olfr61-202ENSMUST00000210241 1348 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Tmed9-203ENSMUST00000224741 1450 ntBASIC12.34□□□□□ -0.43
Trim3Q9R1R2 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.43
Trim3Q9R1R2 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.43
Trim3Q9R1R2 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Trim3Q9R1R2 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Pcnx3-202ENSMUST00000113615 7264 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Gm13689-201ENSMUST00000119360 685 ntBASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Gm13070-201ENSMUST00000146532 768 ntTSL 5 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Gm15429-201ENSMUST00000151268 798 ntBASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Gm9002-201ENSMUST00000178437 499 ntBASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Gm2495-201ENSMUST00000191160 466 ntBASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Dlg4-204ENSMUST00000108589 3271 ntTSL 5 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Clec4g-201ENSMUST00000058040 1441 ntTSL 5 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim3Q9R1R2 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms