Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 H2-Pa-201ENSMUST00000182803 626 ntBASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Cracr2a-201ENSMUST00000071563 1094 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Gm13127-201ENSMUST00000118978 1389 ntBASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Ptch2-201ENSMUST00000030443 4382 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Ssr1-203ENSMUST00000225246 1825 ntBASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Gm38376-201ENSMUST00000195493 2253 ntBASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Ddx56Q9D0R4 Ampd2-202ENSMUST00000102637 3586 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ddx56Q9D0R4 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ddx56Q9D0R4 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ddx56Q9D0R4 Hk1-202ENSMUST00000099691 4278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ddx56Q9D0R4 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ddx56Q9D0R4 Smarca4-204ENSMUST00000174008 5405 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.2
Ddx56Q9D0R4 Cpsf4l-203ENSMUST00000106617 1123 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 CT030657.3-201ENSMUST00000222707 1200 ntBASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Ddx56Q9D0R4 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Hyal1-204ENSMUST00000144392 1332 ntTSL 5 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Rhox2f-201ENSMUST00000115173 799 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Rab40c-203ENSMUST00000164982 789 ntTSL 5 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Fkbp7-201ENSMUST00000002809 860 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Gm26651-201ENSMUST00000181851 2325 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Ddx56Q9D0R4 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms