Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC10.63□□□□□ -0.71
RTRAFQ9CQE8 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Rpl36al-203ENSMUST00000110620 757 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Gm6539-201ENSMUST00000119157 1064 ntBASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Gm6222-201ENSMUST00000120787 396 ntBASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Mir5131-201ENSMUST00000175426 93 ntBASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Itfg2-203ENSMUST00000142615 3191 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Otof-201ENSMUST00000074171 7129 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC10.62□□□□□ -0.71
RTRAFQ9CQE8 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Gm42934-201ENSMUST00000196920 1345 ntBASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Dnajc22-201ENSMUST00000061295 1564 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Gm5864-201ENSMUST00000202263 970 ntBASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Gm18195-201ENSMUST00000207604 706 ntBASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Scaf4-202ENSMUST00000163419 4169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Adamts10-201ENSMUST00000087623 4043 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Cep350-204ENSMUST00000138762 13307 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Myo15-203ENSMUST00000094135 11715 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Gm13722-201ENSMUST00000117964 3066 ntBASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
RTRAFQ9CQE8 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms