Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Eif5-202ENSMUST00000166123 4050 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Gm28631-201ENSMUST00000190740 334 ntBASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Vps39Q8R5L3 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Gm43417-201ENSMUST00000201586 5207 ntBASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Rims3-204ENSMUST00000171363 977 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Gm18307-201ENSMUST00000206864 949 ntBASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Gm6218-201ENSMUST00000219812 628 ntBASIC13.12□□□□□ -0.31
Vps39Q8R5L3 AC156560.2-201ENSMUST00000221232 264 ntBASIC13.12□□□□□ -0.31
Vps39Q8R5L3 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Rpp21-201ENSMUST00000025319 729 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Vrtn-202ENSMUST00000166772 3098 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Syde2-203ENSMUST00000200546 4712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Vps39Q8R5L3 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps39Q8R5L3 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps39Q8R5L3 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps39Q8R5L3 Gm9025-201ENSMUST00000122415 1575 ntBASIC13.11□□□□□ -0.31
Vps39Q8R5L3 AC113060.1-201ENSMUST00000225689 1573 ntBASIC13.11□□□□□ -0.31
Vps39Q8R5L3 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps39Q8R5L3 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Vps39Q8R5L3 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps39Q8R5L3 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
Vps39Q8R5L3 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps39Q8R5L3 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC13.11□□□□□ -0.31
Vps39Q8R5L3 Elf1-201ENSMUST00000040131 4235 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps39Q8R5L3 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Vps39Q8R5L3 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC13.11□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms