Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cux1P53564 Kcnh2-201ENSMUST00000036092 4221 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cux1P53564 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC19.79■□□□□ 0.76
Cux1P53564 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC19.79■□□□□ 0.76
Cux1P53564 Gm23119-201ENSMUST00000158610 140 ntBASIC19.79■□□□□ 0.76
Cux1P53564 Runx2-213ENSMUST00000162878 2987 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Cux1P53564 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Cux1P53564 Gm7467-201ENSMUST00000185173 652 ntBASIC19.79■□□□□ 0.76
Cux1P53564 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Cux1P53564 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Cux1P53564 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cux1P53564 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC19.79■□□□□ 0.76
Cux1P53564 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Cux1P53564 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cux1P53564 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cux1P53564 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC19.79■□□□□ 0.76
Cux1P53564 AC154262.2-201ENSMUST00000224310 2293 ntBASIC19.79■□□□□ 0.76
Cux1P53564 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cux1P53564 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cux1P53564 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC19.79■□□□□ 0.76
Cux1P53564 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cux1P53564 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Mest-211ENSMUST00000163949 2561 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC19.78■□□□□ 0.76
Cux1P53564 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC19.78■□□□□ 0.76
Cux1P53564 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Gm5051-201ENSMUST00000204085 485 ntBASIC19.78■□□□□ 0.76
Cux1P53564 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC19.78■□□□□ 0.76
Cux1P53564 AC138604.1-201ENSMUST00000226969 739 ntBASIC19.78■□□□□ 0.76
Cux1P53564 Gm10076-201ENSMUST00000073238 384 ntBASIC19.78■□□□□ 0.76
Cux1P53564 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Cux1P53564 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cux1P53564 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Cux1P53564 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cux1P53564 Mir874-201ENSMUST00000104769 76 ntBASIC19.77■□□□□ 0.76
Cux1P53564 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Cux1P53564 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC19.77■□□□□ 0.76
Cux1P53564 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Cux1P53564 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC19.77■□□□□ 0.76
Cux1P53564 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Cux1P53564 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cux1P53564 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC19.77■□□□□ 0.76
Cux1P53564 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC19.77■□□□□ 0.76
Cux1P53564 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC19.77■□□□□ 0.76
Cux1P53564 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC19.77■□□□□ 0.76
Cux1P53564 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cux1P53564 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Cux1P53564 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Cux1P53564 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cux1P53564 AC166491.1-201ENSMUST00000227053 2308 ntBASIC19.77■□□□□ 0.76
Cux1P53564 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Cux1P53564 Gm5580-201ENSMUST00000122096 1362 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Cux1P53564 Gm43081-201ENSMUST00000199082 1380 ntBASIC19.77■□□□□ 0.76
Cux1P53564 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC19.77■□□□□ 0.75
Cux1P53564 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
Cux1P53564 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
Cux1P53564 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Cux1P53564 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC19.76■□□□□ 0.75
Cux1P53564 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC19.76■□□□□ 0.75
Cux1P53564 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC19.76■□□□□ 0.75
Cux1P53564 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Gm45118-201ENSMUST00000208928 825 ntBASIC19.76■□□□□ 0.75
Cux1P53564 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC19.76■□□□□ 0.75
Cux1P53564 AC154276.3-201ENSMUST00000227643 998 ntBASIC19.76■□□□□ 0.75
Cux1P53564 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Gm44401-201ENSMUST00000204462 2375 ntBASIC19.76■□□□□ 0.75
Cux1P53564 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Cux1P53564 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Gm13812-201ENSMUST00000118061 1347 ntBASIC19.76■□□□□ 0.75
Cux1P53564 Gm13810-201ENSMUST00000118584 1347 ntBASIC19.76■□□□□ 0.75
Cux1P53564 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC19.76■□□□□ 0.75
Cux1P53564 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Cux1P53564 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Cux1P53564 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC19.76■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 26.9 ms