Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC15.65■□□□□ 0.1
Rfx1P48377 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC15.65■□□□□ 0.1
Rfx1P48377 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC15.65■□□□□ 0.1
Rfx1P48377 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC15.65■□□□□ 0.1
Rfx1P48377 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
Rfx1P48377 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC15.65■□□□□ 0.1
Rfx1P48377 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Ttc17-202ENSMUST00000094801 3408 ntTSL 5 BASIC15.65■□□□□ 0.1
Rfx1P48377 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Rfx1P48377 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC15.65■□□□□ 0.1
Rfx1P48377 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Rfx1P48377 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC15.64■□□□□ 0.09
Rfx1P48377 Tmsb4x-201ENSMUST00000112172 768 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Gm6161-201ENSMUST00000121942 1102 ntBASIC15.64■□□□□ 0.09
Rfx1P48377 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Rfx1P48377 Gm6254-201ENSMUST00000168178 1072 ntBASIC15.64■□□□□ 0.09
Rfx1P48377 Gm6153-201ENSMUST00000172004 1058 ntBASIC15.64■□□□□ 0.09
Rfx1P48377 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Rfx1P48377 Gm27772-201ENSMUST00000184900 187 ntBASIC15.64■□□□□ 0.09
Rfx1P48377 Gm5641-202ENSMUST00000198699 1080 ntBASIC15.64■□□□□ 0.09
Rfx1P48377 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Rfx1P48377 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC15.64■□□□□ 0.09
Rfx1P48377 Gm17795-201ENSMUST00000214505 757 ntBASIC15.64■□□□□ 0.09
Rfx1P48377 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Rfx1P48377 CT573086.1-201ENSMUST00000227202 1074 ntBASIC15.64■□□□□ 0.09
Rfx1P48377 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Rfx1P48377 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Rfx1P48377 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Rfx1P48377 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Srl-201ENSMUST00000023161 5000 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Gm43045-201ENSMUST00000198725 2095 ntBASIC15.63■□□□□ 0.09
Rfx1P48377 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Gm4875-201ENSMUST00000118257 786 ntBASIC15.63■□□□□ 0.09
Rfx1P48377 Pax8-208ENSMUST00000153601 1226 ntTSL 5 BASIC15.63■□□□□ 0.09
Rfx1P48377 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Gm17837-201ENSMUST00000186435 985 ntBASIC15.63■□□□□ 0.09
Rfx1P48377 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Gm17870-201ENSMUST00000219489 1174 ntBASIC15.63■□□□□ 0.09
Rfx1P48377 AC093022.5-201ENSMUST00000226841 1079 ntBASIC15.63■□□□□ 0.09
Rfx1P48377 1700018B08Rik-201ENSMUST00000034265 1084 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 CT009757.3-201ENSMUST00000223367 2320 ntBASIC15.63■□□□□ 0.09
Rfx1P48377 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Rfx1P48377 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Rfx1P48377 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Chia1-201ENSMUST00000079132 1681 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Rfx1P48377 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 30 ms