Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC15.14■□□□□ 0.01
Col1a1P11087 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC15.14■□□□□ 0.01
Col1a1P11087 Gm23699-201ENSMUST00000158835 135 ntBASIC15.14■□□□□ 0.01
Col1a1P11087 Pdxk-ps-202ENSMUST00000160550 876 ntBASIC15.14■□□□□ 0.01
Col1a1P11087 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC15.14■□□□□ 0.01
Col1a1P11087 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC15.14■□□□□ 0.01
Col1a1P11087 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC15.14■□□□□ 0.01
Col1a1P11087 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC15.14■□□□□ 0.01
Col1a1P11087 D9Wsu149-201ENSMUST00000214169 594 ntBASIC15.14■□□□□ 0.01
Col1a1P11087 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC15.14■□□□□ 0.01
Col1a1P11087 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Col1a1P11087 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Col1a1P11087 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
Col1a1P11087 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Gm4782-201ENSMUST00000168705 2046 ntBASIC15.14■□□□□ 0.01
Col1a1P11087 Gm43081-201ENSMUST00000199082 1380 ntBASIC15.14■□□□□ 0.01
Col1a1P11087 Erfe-201ENSMUST00000086861 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Col1a1P11087 2510009E07Rik-201ENSMUST00000053336 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Col1a1P11087 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
Col1a1P11087 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Col1a1P11087 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC15.14■□□□□ 0.01
Col1a1P11087 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Gm27438-201ENSMUST00000183480 110 ntBASIC15.14■□□□□ 0.01
Col1a1P11087 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC15.14■□□□□ 0.01
Col1a1P11087 Gm44126-201ENSMUST00000204831 514 ntBASIC15.14■□□□□ 0.01
Col1a1P11087 AC125486.1-201ENSMUST00000218701 320 ntBASIC15.14■□□□□ 0.01
Col1a1P11087 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC15.14■□□□□ 0.01
Col1a1P11087 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Col1a1P11087 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Col1a1P11087 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Col1a1P11087 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Col1a1P11087 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Gm13045-201ENSMUST00000119019 712 ntBASIC15.13■□□□□ 0.01
Col1a1P11087 Gm12208-201ENSMUST00000122004 163 ntBASIC15.13■□□□□ 0.01
Col1a1P11087 Gm17168-201ENSMUST00000169146 345 ntTSL 5 BASIC15.13■□□□□ 0.01
Col1a1P11087 Gm28882-201ENSMUST00000185504 314 ntBASIC15.13■□□□□ 0.01
Col1a1P11087 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC15.13■□□□□ 0.01
Col1a1P11087 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 AC125209.1-201ENSMUST00000225812 766 ntBASIC15.13■□□□□ 0.01
Col1a1P11087 1700001J03Rik-201ENSMUST00000073721 787 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC15.13■□□□□ 0.01
Col1a1P11087 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Col1a1P11087 Gm10729-202ENSMUST00000193403 1375 ntBASIC15.13■□□□□ 0.01
Col1a1P11087 Gigyf1-201ENSMUST00000031727 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col1a1P11087 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col1a1P11087 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col1a1P11087 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col1a1P11087 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col1a1P11087 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col1a1P11087 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
Col1a1P11087 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col1a1P11087 Dync1i2-202ENSMUST00000100028 2097 ntTSL 5 BASIC15.12■□□□□ 0.01
Col1a1P11087 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col1a1P11087 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col1a1P11087 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Col1a1P11087 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Col1a1P11087 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col1a1P11087 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC15.12■□□□□ 0.01
Col1a1P11087 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
Col1a1P11087 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Col1a1P11087 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Col1a1P11087 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms