Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm27631-201ENSMUST00000184163 466 ntBASIC10.82□□□□□ -0.68
Hmgb3O54879 4933437G19Rik-201ENSMUST00000197910 1178 ntBASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm9449-201ENSMUST00000207265 1011 ntBASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm45453-201ENSMUST00000211758 853 ntBASIC10.82□□□□□ -0.68
Hmgb3O54879 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC10.82□□□□□ -0.68
Hmgb3O54879 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Col6a6-203ENSMUST00000166431 7098 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm44851-201ENSMUST00000205735 2309 ntBASIC10.82□□□□□ -0.68
Hmgb3O54879 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Madd-202ENSMUST00000066473 5974 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Hmgb3O54879 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Auts2-209ENSMUST00000161804 5392 ntAPPRIS P5 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Gm43463-201ENSMUST00000195967 1803 ntBASIC10.81□□□□□ -0.68
Hmgb3O54879 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Tex19.1-201ENSMUST00000039088 1745 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Hmgb3O54879 Ctnnd1-206ENSMUST00000111675 5089 ntTSL 5 BASIC10.81□□□□□ -0.68
Hmgb3O54879 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Preb-201ENSMUST00000074840 6300 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC10.81□□□□□ -0.68
Hmgb3O54879 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC10.81□□□□□ -0.68
Hmgb3O54879 Gm6539-201ENSMUST00000119157 1064 ntBASIC10.81□□□□□ -0.68
Hmgb3O54879 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC10.81□□□□□ -0.68
Hmgb3O54879 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Gm11025-201ENSMUST00000140773 466 ntBASIC10.81□□□□□ -0.68
Hmgb3O54879 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Ighv1-51-201ENSMUST00000192903 354 ntBASIC10.81□□□□□ -0.68
Hmgb3O54879 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Gm43303-201ENSMUST00000200133 669 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC10.81□□□□□ -0.68
Hmgb3O54879 Gm18934-201ENSMUST00000216671 1044 ntBASIC10.81□□□□□ -0.68
Hmgb3O54879 Gm5364-201ENSMUST00000216789 889 ntBASIC10.81□□□□□ -0.68
Hmgb3O54879 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Hmgb3O54879 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Hmgb3O54879 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Hmgb3O54879 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC10.81□□□□□ -0.68
Hmgb3O54879 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Met-202ENSMUST00000115442 4663 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Hmgb3O54879 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC10.81□□□□□ -0.68
Hmgb3O54879 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 AC139350.1-201ENSMUST00000227064 1594 ntBASIC10.81□□□□□ -0.68
Hmgb3O54879 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Smarca2-201ENSMUST00000025862 5921 ntAPPRIS P2 TSL 5 BASIC10.81□□□□□ -0.68
Hmgb3O54879 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
Hmgb3O54879 Dhx30-212ENSMUST00000197928 4441 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Hmgb3O54879 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Gm29895-201ENSMUST00000209933 5652 ntTSL 5 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC10.8□□□□□ -0.68
Hmgb3O54879 Lss-201ENSMUST00000048678 4667 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Hmgb3O54879 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC10.8□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 182.7 ms