Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Gm9431-201ENSMUST00000119765 1051 ntBASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Gm12539-201ENSMUST00000121549 1098 ntBASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Creb3-206ENSMUST00000167751 1212 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Zfp784-201ENSMUST00000062428 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Caprin1-201ENSMUST00000028607 6169 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim54Q9ERP3 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim54Q9ERP3 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim54Q9ERP3 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trim54Q9ERP3 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC14.21□□□□□ -0.14
Trim54Q9ERP3 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Trim54Q9ERP3 AC121805.2-201ENSMUST00000218808 2538 ntBASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Gm45003-201ENSMUST00000205875 2158 ntBASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Gm4768-201ENSMUST00000206199 686 ntBASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Gm6458-201ENSMUST00000211573 635 ntBASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Gm8227-201ENSMUST00000223306 571 ntBASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Txn2-201ENSMUST00000005487 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 n-R5s77-201ENSMUST00000083757 119 ntBASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Pde12-201ENSMUST00000052932 7725 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trim54Q9ERP3 Sirt3-210ENSMUST00000211179 1606 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Tbkbp1-201ENSMUST00000066078 3338 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Gm5637-201ENSMUST00000153890 1119 ntBASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Gm3890-201ENSMUST00000182416 207 ntBASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Gm7895-201ENSMUST00000187459 1173 ntBASIC14.19□□□□□ -0.14
Trim54Q9ERP3 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Gm6169-201ENSMUST00000071118 1030 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Csk-209ENSMUST00000217314 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trim54Q9ERP3 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Gm43364-201ENSMUST00000196046 3274 ntBASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Gm2991-201ENSMUST00000173338 480 ntBASIC14.18□□□□□ -0.14
Trim54Q9ERP3 AC132384.14-201ENSMUST00000219346 1147 ntBASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trim54Q9ERP3 AC155298.2-201ENSMUST00000225485 6226 ntBASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 66.4 ms