Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Gm11978-201ENSMUST00000122315 466 ntBASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Tmem80-205ENSMUST00000132061 667 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Gm44069-201ENSMUST00000204898 506 ntBASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Usp17le-201ENSMUST00000053464 1626 ntTSL 5 BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 AL645783.1-201ENSMUST00000221416 1832 ntBASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 1700029B24Rik-201ENSMUST00000194040 497 ntBASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 AC164107.1-201ENSMUST00000227730 2161 ntBASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Engase-202ENSMUST00000135383 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Tmem169-201ENSMUST00000027380 2928 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Gm45643-201ENSMUST00000211364 1484 ntBASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx56Q9D0R4 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Gm7002-201ENSMUST00000221386 2165 ntBASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Gm8798-201ENSMUST00000211877 1661 ntBASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Gm44851-201ENSMUST00000205735 2309 ntBASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Mir692-1-201ENSMUST00000102263 109 ntBASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Gm13612-201ENSMUST00000119276 390 ntBASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Ighv5-13-201ENSMUST00000193550 290 ntBASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Gm38671-201ENSMUST00000200573 130 ntBASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Gm7287-201ENSMUST00000205267 602 ntBASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
Ddx56Q9D0R4 AC151895.1-201ENSMUST00000219025 1742 ntBASIC13.78□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 60.3 ms