Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Csrnp2-201ENSMUST00000061457 4126 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 F10-204ENSMUST00000128418 1395 ntTSL 5 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Cacna1g-205ENSMUST00000107786 7984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 G6pdx-201ENSMUST00000004327 2652 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Ttll9-202ENSMUST00000103155 1552 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Pcdh10-203ENSMUST00000171554 7273 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Ifnar2-203ENSMUST00000117836 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Gm12151-201ENSMUST00000121374 290 ntBASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Gm14752-201ENSMUST00000120719 2075 ntBASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Pygo2-202ENSMUST00000107413 2911 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Fip1l1-204ENSMUST00000113536 4769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Ddx28Q9CWT6 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Matn2-203ENSMUST00000226766 3252 ntBASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Gm13859-201ENSMUST00000119936 1423 ntBASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Mpp3-204ENSMUST00000107168 3094 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Ube2i-205ENSMUST00000172587 508 ntTSL 2 BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Aprt-209ENSMUST00000213062 560 ntTSL 2 BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 AC238811.1-201ENSMUST00000225302 441 ntBASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Mrgprh-201ENSMUST00000075296 1809 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Gm37269-201ENSMUST00000193906 1891 ntBASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Brwd1-201ENSMUST00000023631 8209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Arhgap33-201ENSMUST00000044338 4280 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Ddx28Q9CWT6 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Gm40377-201ENSMUST00000204604 2015 ntBASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Sugp1-201ENSMUST00000011450 2681 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Ddx28Q9CWT6 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 106.3 ms