Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc40Q8BI79 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc40Q8BI79 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc40Q8BI79 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc40Q8BI79 Satb2-202ENSMUST00000114415 5805 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc40Q8BI79 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc40Q8BI79 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc40Q8BI79 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc40Q8BI79 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Ccdc40Q8BI79 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Tbx4-201ENSMUST00000000096 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Rpl21-201ENSMUST00000035983 1856 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 1700001C02Rik-203ENSMUST00000127815 660 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Auts2-212ENSMUST00000178555 309 ntBASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Gm19220-201ENSMUST00000222682 803 ntBASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
Ccdc40Q8BI79 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Gne-209ENSMUST00000173234 2149 ntTSL 5 BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Gm38144-201ENSMUST00000192790 465 ntBASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Gm42612-201ENSMUST00000197986 623 ntBASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Gm43170-201ENSMUST00000199827 612 ntBASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Gm7730-201ENSMUST00000212486 454 ntBASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Gm17870-201ENSMUST00000219489 1174 ntBASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
Ccdc40Q8BI79 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Srsf5-205ENSMUST00000110356 1568 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Gm12537-201ENSMUST00000119266 1002 ntBASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Gm12070-201ENSMUST00000119551 1002 ntBASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Gm12671-201ENSMUST00000119978 1002 ntBASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Gm13292-201ENSMUST00000120014 1000 ntBASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Gm12403-201ENSMUST00000121384 959 ntBASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ccdc40Q8BI79 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC13.72□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms