Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Gm27839-201ENSMUST00000184242 106 ntBASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Gm44799-201ENSMUST00000207639 1202 ntBASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Exosc7-201ENSMUST00000026891 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Emd-202ENSMUST00000088313 1338 ntTSL 2 BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC14.06□□□□□ -0.16
Upf3bQ3ULL6 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 4933409G03Rik-201ENSMUST00000102713 1263 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Gm11803-201ENSMUST00000119966 444 ntBASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Gm19931-201ENSMUST00000198920 368 ntBASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 AC122305.4-201ENSMUST00000216159 1206 ntBASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 AC154276.1-201ENSMUST00000228874 1299 ntBASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Rgs16-201ENSMUST00000027748 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Ntm-203ENSMUST00000115237 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Upf3bQ3ULL6 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Gm8810-201ENSMUST00000172895 754 ntBASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 AC135669.1-202ENSMUST00000216742 540 ntBASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Ano6-208ENSMUST00000227791 3149 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Hnrnph1-203ENSMUST00000109142 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Upf3bQ3ULL6 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Fbxo34-205ENSMUST00000168833 2993 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Upf3bQ3ULL6 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms