Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Col8a1Q00780 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
Col8a1Q00780 Rbbp8-201ENSMUST00000047322 3618 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
Col8a1Q00780 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC11.21□□□□□ -0.61
Col8a1Q00780 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm37019-201ENSMUST00000192133 2134 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC11.21□□□□□ -0.61
Col8a1Q00780 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC11.21□□□□□ -0.61
Col8a1Q00780 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 Unc119b-201ENSMUST00000060798 3659 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm4081-201ENSMUST00000195287 1838 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
Col8a1Q00780 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC11.21□□□□□ -0.61
Col8a1Q00780 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm14451-201ENSMUST00000121581 1542 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm11628-201ENSMUST00000117568 171 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Olfr647-ps1-201ENSMUST00000121599 960 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm12363-201ENSMUST00000122250 668 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm13316-201ENSMUST00000140537 691 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm13570-201ENSMUST00000140763 309 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm37042-201ENSMUST00000193816 581 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm31256-201ENSMUST00000194705 506 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm44100-201ENSMUST00000204329 436 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC11.21□□□□□ -0.61
Col8a1Q00780 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm19163-201ENSMUST00000223313 780 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
Col8a1Q00780 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
Col8a1Q00780 Gm12500-202ENSMUST00000186471 2428 ntBASIC11.21□□□□□ -0.61
Col8a1Q00780 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col8a1Q00780 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col8a1Q00780 Klk7-201ENSMUST00000032955 1895 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col8a1Q00780 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.62
Col8a1Q00780 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col8a1Q00780 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col8a1Q00780 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col8a1Q00780 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col8a1Q00780 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.62
Col8a1Q00780 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC11.21□□□□□ -0.62
Col8a1Q00780 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC11.21□□□□□ -0.62
Col8a1Q00780 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Keap1-205ENSMUST00000194542 3151 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC11.2□□□□□ -0.62
Col8a1Q00780 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Crry-ps-201ENSMUST00000079090 1309 ntBASIC11.2□□□□□ -0.62
Col8a1Q00780 Slc25a19-212ENSMUST00000178003 2614 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Gm16479-201ENSMUST00000121706 932 ntBASIC11.2□□□□□ -0.62
Col8a1Q00780 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Gm29961-201ENSMUST00000214692 644 ntTSL 5 BASIC11.2□□□□□ -0.62
Col8a1Q00780 Gm18556-201ENSMUST00000219748 1031 ntBASIC11.2□□□□□ -0.62
Col8a1Q00780 Gm14267-206ENSMUST00000226870 1209 ntBASIC11.2□□□□□ -0.62
Col8a1Q00780 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Leap2-201ENSMUST00000036045 531 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Il17re-202ENSMUST00000058548 2940 ntAPPRIS P2 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col8a1Q00780 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC11.2□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms