Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC11.34□□□□□ -0.59
Nkx3-1P97436 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Gm14149-201ENSMUST00000123048 1853 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Wrap53-201ENSMUST00000048139 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Pou2f2-203ENSMUST00000108415 7095 ntAPPRIS P3 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Spin1-201ENSMUST00000095797 4434 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
Nkx3-1P97436 Cops4-201ENSMUST00000045993 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Nkx3-1P97436 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.59
Nkx3-1P97436 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.59
Nkx3-1P97436 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gm43056-201ENSMUST00000197865 2791 ntBASIC11.33□□□□□ -0.6
Nkx3-1P97436 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gm24255-201ENSMUST00000104481 128 ntBASIC11.33□□□□□ -0.6
Nkx3-1P97436 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Pagr1b-201ENSMUST00000172958 693 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gm5896-201ENSMUST00000189662 1024 ntBASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gm38000-201ENSMUST00000192390 1215 ntBASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gm45881-201ENSMUST00000210659 517 ntTSL 5 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gm6458-201ENSMUST00000211573 635 ntBASIC11.33□□□□□ -0.6
Nkx3-1P97436 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Tbc1d16-201ENSMUST00000036113 6986 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Gm11992-201ENSMUST00000043285 2400 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Nkx3-1P97436 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Tekt2-201ENSMUST00000030658 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Hist1h2be-202ENSMUST00000091704 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Gm22323-201ENSMUST00000103832 109 ntBASIC11.32□□□□□ -0.6
Nkx3-1P97436 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC11.32□□□□□ -0.6
Nkx3-1P97436 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Ighv1-62-201ENSMUST00000193406 350 ntBASIC11.32□□□□□ -0.6
Nkx3-1P97436 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Gm18584-201ENSMUST00000203098 964 ntBASIC11.32□□□□□ -0.6
Nkx3-1P97436 CT485787.1-201ENSMUST00000225617 968 ntBASIC11.32□□□□□ -0.6
Nkx3-1P97436 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Nkx3-1P97436 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms