Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Lire1P11260 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Lire1P11260 AC154262.2-201ENSMUST00000224310 2293 ntBASIC12.51□□□□□ -0.41
Lire1P11260 Gm43102-201ENSMUST00000201004 2324 ntBASIC12.51□□□□□ -0.41
Lire1P11260 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Pja1-203ENSMUST00000113792 3038 ntAPPRIS P4 TSL 5 BASIC12.51□□□□□ -0.41
Lire1P11260 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.51□□□□□ -0.41
Lire1P11260 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
Lire1P11260 Prkcg-201ENSMUST00000100301 3127 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Olfm2-201ENSMUST00000034692 1836 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Cenpt-201ENSMUST00000040776 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Lire1P11260 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Lire1P11260 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Lire1P11260 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC12.51□□□□□ -0.41
Lire1P11260 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC12.51□□□□□ -0.41
Lire1P11260 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 AC155286.1-201ENSMUST00000218632 448 ntBASIC12.51□□□□□ -0.41
Lire1P11260 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC12.51□□□□□ -0.41
Lire1P11260 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Lire1P11260 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Mir125a-201ENSMUST00000083545 68 ntBASIC12.51□□□□□ -0.41
Lire1P11260 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC12.51□□□□□ -0.41
Lire1P11260 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Lire1P11260 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Gm45751-201ENSMUST00000210185 1573 ntBASIC12.51□□□□□ -0.41
Lire1P11260 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Lire1P11260 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.5□□□□□ -0.41
Lire1P11260 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
Lire1P11260 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC12.5□□□□□ -0.41
Lire1P11260 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Lire1P11260 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Lire1P11260 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Lire1P11260 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Lire1P11260 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC12.5□□□□□ -0.41
Lire1P11260 Gamt-202ENSMUST00000105363 988 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC12.5□□□□□ -0.41
Lire1P11260 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC12.5□□□□□ -0.41
Lire1P11260 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Gm12138-201ENSMUST00000122180 951 ntBASIC12.5□□□□□ -0.41
Lire1P11260 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC12.5□□□□□ -0.41
Lire1P11260 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Lire1P11260 Mir6392-201ENSMUST00000184924 108 ntBASIC12.5□□□□□ -0.41
Lire1P11260 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Lire1P11260 Gm10766-202ENSMUST00000194123 606 ntBASIC12.5□□□□□ -0.41
Lire1P11260 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Polr2g-201ENSMUST00000096261 868 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Lire1P11260 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Lire1P11260 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Lire1P11260 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Lire1P11260 Enpp1-203ENSMUST00000135846 2721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.5□□□□□ -0.41
Lire1P11260 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Lire1P11260 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lire1P11260 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Lire1P11260 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 72.1 ms