Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Col1a1P11087 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC15.17■□□□□ 0.02
Col1a1P11087 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Gm13408-201ENSMUST00000119822 798 ntBASIC15.17■□□□□ 0.02
Col1a1P11087 Gm13935-201ENSMUST00000121859 798 ntBASIC15.17■□□□□ 0.02
Col1a1P11087 Gm20521-201ENSMUST00000134077 1245 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Col1a1P11087 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC15.17■□□□□ 0.02
Col1a1P11087 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC15.17■□□□□ 0.02
Col1a1P11087 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Col1a1P11087 Ccser2-208ENSMUST00000183007 1293 ntTSL 5 BASIC15.17■□□□□ 0.02
Col1a1P11087 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC15.17■□□□□ 0.02
Col1a1P11087 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Col1a1P11087 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
Col1a1P11087 Kansl2-ps-201ENSMUST00000181818 1461 ntBASIC15.17■□□□□ 0.02
Col1a1P11087 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC15.17■□□□□ 0.02
Col1a1P11087 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Pfkfb3-212ENSMUST00000170196 2163 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Gm43134-201ENSMUST00000199434 1886 ntBASIC15.17■□□□□ 0.02
Col1a1P11087 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
Col1a1P11087 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Col1a1P11087 Dctn2-201ENSMUST00000026479 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
Col1a1P11087 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
Col1a1P11087 Gm5070-201ENSMUST00000177599 862 ntBASIC15.16■□□□□ 0.02
Col1a1P11087 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC15.16■□□□□ 0.02
Col1a1P11087 Gm39404-201ENSMUST00000216350 313 ntBASIC15.16■□□□□ 0.02
Col1a1P11087 Ppie-201ENSMUST00000030404 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Mir339-201ENSMUST00000083659 96 ntBASIC15.16■□□□□ 0.02
Col1a1P11087 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Col1a1P11087 Gm19461-205ENSMUST00000191207 2566 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Col1a1P11087 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Col1a1P11087 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Dhrs3-206ENSMUST00000154208 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
Col1a1P11087 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Gm9062-201ENSMUST00000117712 727 ntBASIC15.15■□□□□ 0.02
Col1a1P11087 Gm13611-201ENSMUST00000118269 318 ntBASIC15.15■□□□□ 0.02
Col1a1P11087 Gm12380-201ENSMUST00000119012 544 ntBASIC15.15■□□□□ 0.02
Col1a1P11087 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC15.15■□□□□ 0.02
Col1a1P11087 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC15.15■□□□□ 0.02
Col1a1P11087 Gm43830-201ENSMUST00000198760 1067 ntBASIC15.15■□□□□ 0.02
Col1a1P11087 Gm9555-201ENSMUST00000200908 583 ntBASIC15.15■□□□□ 0.02
Col1a1P11087 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC15.15■□□□□ 0.02
Col1a1P11087 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC15.15■□□□□ 0.02
Col1a1P11087 AC165260.3-202ENSMUST00000224550 1031 ntBASIC15.15■□□□□ 0.02
Col1a1P11087 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
Col1a1P11087 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
Col1a1P11087 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Col1a1P11087 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Col1a1P11087 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Col1a1P11087 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC15.14■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms