Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col3a1P08121 Gm44405-201ENSMUST00000198952 126 ntBASIC15.48■□□□□ 0.07
Col3a1P08121 Gm43138-201ENSMUST00000199123 708 ntBASIC15.48■□□□□ 0.07
Col3a1P08121 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
Col3a1P08121 Gm8712-201ENSMUST00000221090 701 ntBASIC15.48■□□□□ 0.07
Col3a1P08121 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC15.48■□□□□ 0.07
Col3a1P08121 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col3a1P08121 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
Col3a1P08121 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col3a1P08121 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col3a1P08121 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col3a1P08121 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col3a1P08121 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col3a1P08121 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Col3a1P08121 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC15.47■□□□□ 0.07
Col3a1P08121 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC15.47■□□□□ 0.07
Col3a1P08121 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Gm15276-201ENSMUST00000145953 498 ntBASIC15.47■□□□□ 0.07
Col3a1P08121 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
Col3a1P08121 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC15.47■□□□□ 0.07
Col3a1P08121 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC15.47■□□□□ 0.07
Col3a1P08121 Gm39404-201ENSMUST00000216350 313 ntBASIC15.47■□□□□ 0.07
Col3a1P08121 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC15.47■□□□□ 0.07
Col3a1P08121 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 Tfe3-206ENSMUST00000115679 3239 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
Col3a1P08121 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC15.47■□□□□ 0.07
Col3a1P08121 Ankrd24-201ENSMUST00000119336 3561 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
Col3a1P08121 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
Col3a1P08121 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Gm4819-201ENSMUST00000182170 1009 ntBASIC15.46■□□□□ 0.07
Col3a1P08121 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Dmrtc1c2-201ENSMUST00000087896 1255 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC15.46■□□□□ 0.07
Col3a1P08121 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
Col3a1P08121 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC15.46■□□□□ 0.07
Col3a1P08121 Gm10782-202ENSMUST00000223775 1480 ntBASIC15.46■□□□□ 0.07
Col3a1P08121 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Tmem51os1-204ENSMUST00000153023 3440 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
Col3a1P08121 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Ppp2r5c-204ENSMUST00000221074 1971 ntTSL 5 BASIC15.46■□□□□ 0.07
Col3a1P08121 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
Col3a1P08121 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
Col3a1P08121 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
Col3a1P08121 Dctn6-203ENSMUST00000118811 934 ntTSL 3 BASIC15.46■□□□□ 0.06
Col3a1P08121 Gm14832-201ENSMUST00000121289 322 ntBASIC15.46■□□□□ 0.06
Col3a1P08121 Gm11752-201ENSMUST00000143291 510 ntTSL 2 BASIC15.46■□□□□ 0.06
Col3a1P08121 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC15.46■□□□□ 0.06
Col3a1P08121 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC15.46■□□□□ 0.06
Col3a1P08121 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC15.46■□□□□ 0.06
Col3a1P08121 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC15.46■□□□□ 0.06
Col3a1P08121 CT030182.1-201ENSMUST00000225935 533 ntBASIC15.46■□□□□ 0.06
Col3a1P08121 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col3a1P08121 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
Col3a1P08121 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Col3a1P08121 Phldb1-213ENSMUST00000144251 3589 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Col3a1P08121 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms