Protein–RNA interactions for Protein: P06804

Tnf, Tumor necrosis factor, mousemouse

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TnfP06804 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
TnfP06804 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC13.9□□□□□ -0.18
TnfP06804 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC13.9□□□□□ -0.18
TnfP06804 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC13.9□□□□□ -0.18
TnfP06804 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Gm3890-201ENSMUST00000182416 207 ntBASIC13.9□□□□□ -0.18
TnfP06804 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC13.9□□□□□ -0.18
TnfP06804 Gm18584-201ENSMUST00000203098 964 ntBASIC13.9□□□□□ -0.18
TnfP06804 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC13.9□□□□□ -0.18
TnfP06804 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC13.9□□□□□ -0.18
TnfP06804 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
TnfP06804 Gm38157-201ENSMUST00000194178 1698 ntBASIC13.9□□□□□ -0.18
TnfP06804 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC13.9□□□□□ -0.18
TnfP06804 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC13.9□□□□□ -0.18
TnfP06804 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
TnfP06804 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
TnfP06804 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
TnfP06804 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
TnfP06804 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.19
TnfP06804 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
TnfP06804 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Gm37885-201ENSMUST00000192568 1391 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC13.89□□□□□ -0.19
TnfP06804 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC13.89□□□□□ -0.19
TnfP06804 Gm6023-201ENSMUST00000118217 606 ntBASIC13.89□□□□□ -0.19
TnfP06804 Gm9431-201ENSMUST00000119765 1051 ntBASIC13.89□□□□□ -0.19
TnfP06804 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Gm11658-201ENSMUST00000120913 1008 ntBASIC13.89□□□□□ -0.19
TnfP06804 Gm2467-201ENSMUST00000182266 1010 ntBASIC13.89□□□□□ -0.19
TnfP06804 Gm6981-201ENSMUST00000182467 1008 ntBASIC13.89□□□□□ -0.19
TnfP06804 Mir8109-201ENSMUST00000184375 117 ntBASIC13.89□□□□□ -0.19
TnfP06804 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC13.89□□□□□ -0.19
TnfP06804 2010106C02Rik-201ENSMUST00000191222 660 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC13.89□□□□□ -0.19
TnfP06804 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC13.89□□□□□ -0.19
TnfP06804 Gm10608-202ENSMUST00000213924 676 ntBASIC13.89□□□□□ -0.19
TnfP06804 Rad23b-201ENSMUST00000030134 3810 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC13.89□□□□□ -0.19
TnfP06804 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Lysmd4-201ENSMUST00000058771 2898 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Ormdl1-201ENSMUST00000027266 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Steap2-203ENSMUST00000115425 4550 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 CT009713.10-201ENSMUST00000225013 1986 ntBASIC13.89□□□□□ -0.19
TnfP06804 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
TnfP06804 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
TnfP06804 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Lrfn2-201ENSMUST00000046254 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Radil-204ENSMUST00000110785 3708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC13.88□□□□□ -0.19
TnfP06804 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC13.88□□□□□ -0.19
TnfP06804 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
TnfP06804 Gm9061-201ENSMUST00000182707 1006 ntBASIC13.88□□□□□ -0.19
TnfP06804 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
TnfP06804 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
TnfP06804 Gm38158-201ENSMUST00000194617 339 ntBASIC13.88□□□□□ -0.19
TnfP06804 Olfr284-202ENSMUST00000206647 966 ntBASIC13.88□□□□□ -0.19
TnfP06804 AC069562.3-201ENSMUST00000225387 587 ntBASIC13.88□□□□□ -0.19
TnfP06804 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
TnfP06804 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
TnfP06804 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Ptgir-201ENSMUST00000086101 2725 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
TnfP06804 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms