Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Dixdc1-203ENSMUST00000117646 5719 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC10.84□□□□□ -0.67
Hmgb3O54879 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Gm38225-201ENSMUST00000194001 393 ntBASIC10.84□□□□□ -0.67
Hmgb3O54879 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 AC174742.1-201ENSMUST00000218272 304 ntBASIC10.84□□□□□ -0.67
Hmgb3O54879 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Hmgb3O54879 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Gm43273-201ENSMUST00000199649 2594 ntBASIC10.84□□□□□ -0.67
Hmgb3O54879 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Ldb3-205ENSMUST00000090040 4981 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Gm42466-201ENSMUST00000202099 1301 ntBASIC10.84□□□□□ -0.67
Hmgb3O54879 Gm17435-202ENSMUST00000212699 1998 ntBASIC10.83□□□□□ -0.68
Hmgb3O54879 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Hmgb3O54879 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Myo18a-208ENSMUST00000108375 7513 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
Hmgb3O54879 Mir698-201ENSMUST00000102164 109 ntBASIC10.83□□□□□ -0.68
Hmgb3O54879 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
Hmgb3O54879 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC10.83□□□□□ -0.68
Hmgb3O54879 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC10.83□□□□□ -0.68
Hmgb3O54879 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC10.83□□□□□ -0.68
Hmgb3O54879 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Gpr146-202ENSMUST00000053120 1040 ntBASIC10.83□□□□□ -0.68
Hmgb3O54879 Haus7-202ENSMUST00000077243 1032 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Hmgb3O54879 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
Hmgb3O54879 Pou4f2-201ENSMUST00000034115 3204 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 AC151895.1-201ENSMUST00000219025 1742 ntBASIC10.83□□□□□ -0.68
Hmgb3O54879 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Lmo7-205ENSMUST00000159314 5774 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Zeb2-211ENSMUST00000153561 2070 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC10.83□□□□□ -0.68
Hmgb3O54879 AC124751.1-201ENSMUST00000222716 1408 ntBASIC10.83□□□□□ -0.68
Hmgb3O54879 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Hmgb3O54879 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Disp1-201ENSMUST00000003035 4984 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Hmgb3O54879 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
Hmgb3O54879 Als2-201ENSMUST00000027178 6342 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Plekha5-201ENSMUST00000087622 7382 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Phip-201ENSMUST00000034787 10756 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm38385-201ENSMUST00000194454 2351 ntBASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Aff1-202ENSMUST00000054979 8323 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
Hmgb3O54879 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Hmgb3O54879 Gm2810-201ENSMUST00000118681 990 ntBASIC10.82□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 146.8 ms