Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Gm23200-201ENSMUST00000104379 132 ntBASIC11.07□□□□□ -0.64
Col6a4A2AX52 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Gm7857-201ENSMUST00000117957 358 ntBASIC11.07□□□□□ -0.64
Col6a4A2AX52 n-R5s14-201ENSMUST00000122688 107 ntBASIC11.07□□□□□ -0.64
Col6a4A2AX52 Gm23699-201ENSMUST00000158835 135 ntBASIC11.07□□□□□ -0.64
Col6a4A2AX52 Gm9550-201ENSMUST00000161130 862 ntBASIC11.07□□□□□ -0.64
Col6a4A2AX52 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Gm31256-201ENSMUST00000194705 506 ntBASIC11.07□□□□□ -0.64
Col6a4A2AX52 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 AC131690.1-201ENSMUST00000218406 374 ntBASIC11.07□□□□□ -0.64
Col6a4A2AX52 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Pdk2-201ENSMUST00000038431 2246 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Acbd5-208ENSMUST00000226571 3802 ntAPPRIS ALT2 BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Gm43273-201ENSMUST00000199649 2594 ntBASIC11.07□□□□□ -0.64
Col6a4A2AX52 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Gm23270-201ENSMUST00000104055 131 ntBASIC11.07□□□□□ -0.64
Col6a4A2AX52 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Gstp-ps-201ENSMUST00000195526 631 ntBASIC11.07□□□□□ -0.64
Col6a4A2AX52 Gm38317-201ENSMUST00000195564 343 ntBASIC11.07□□□□□ -0.64
Col6a4A2AX52 Gm9678-201ENSMUST00000198979 1149 ntBASIC11.07□□□□□ -0.64
Col6a4A2AX52 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col6a4A2AX52 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Gm14208-201ENSMUST00000119645 678 ntBASIC11.06□□□□□ -0.64
Col6a4A2AX52 Gm4760-201ENSMUST00000119663 1030 ntBASIC11.06□□□□□ -0.64
Col6a4A2AX52 Gm16036-201ENSMUST00000150385 1112 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Gm28450-201ENSMUST00000187349 638 ntBASIC11.06□□□□□ -0.64
Col6a4A2AX52 Gm42997-202ENSMUST00000200321 985 ntBASIC11.06□□□□□ -0.64
Col6a4A2AX52 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC11.06□□□□□ -0.64
Col6a4A2AX52 AC134254.1-201ENSMUST00000221362 167 ntBASIC11.06□□□□□ -0.64
Col6a4A2AX52 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC11.06□□□□□ -0.64
Col6a4A2AX52 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Ksr1-207ENSMUST00000226282 5260 ntBASIC11.06□□□□□ -0.64
Col6a4A2AX52 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 4930539M17Rik-201ENSMUST00000194792 846 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC11.06□□□□□ -0.64
Col6a4A2AX52 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col6a4A2AX52 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a4A2AX52 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC11.05□□□□□ -0.64
Col6a4A2AX52 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a4A2AX52 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a4A2AX52 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a4A2AX52 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC11.05□□□□□ -0.64
Col6a4A2AX52 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a4A2AX52 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Col6a4A2AX52 Gm44065-201ENSMUST00000203184 3527 ntBASIC11.05□□□□□ -0.64
Col6a4A2AX52 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 85.2 ms