Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Ncor2-206ENSMUST00000111402 8862 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Dlgap4-201ENSMUST00000000094 1411 ntTSL 5 BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Gm15459-201ENSMUST00000117405 1941 ntBASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Gm8355-201ENSMUST00000177767 1941 ntBASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Cpsf3Q9QXK7 Fchsd1-201ENSMUST00000043437 4270 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 AC131068.2-201ENSMUST00000226175 1453 ntBASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Rpn2-202ENSMUST00000116380 2756 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Angel2-202ENSMUST00000066632 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 AC101945.2-201ENSMUST00000227886 1377 ntBASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Gm11637-201ENSMUST00000120601 592 ntBASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Gm19931-201ENSMUST00000198920 368 ntBASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 AC126253.1-201ENSMUST00000227974 824 ntBASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Cpsf3Q9QXK7 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Gm2639-201ENSMUST00000156881 1297 ntBASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Snora78-201ENSMUST00000158630 128 ntBASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Gm38293-201ENSMUST00000193209 600 ntTSL 2 BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Gm6458-201ENSMUST00000211573 635 ntBASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 AC166349.1-201ENSMUST00000220866 695 ntBASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 AC122314.1-201ENSMUST00000223056 2239 ntBASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Cpsf3Q9QXK7 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Cpsf3Q9QXK7 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
Cpsf3Q9QXK7 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC14.1□□□□□ -0.15
Cpsf3Q9QXK7 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
Cpsf3Q9QXK7 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms