Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim54Q9ERP3 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim54Q9ERP3 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim54Q9ERP3 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC14.24□□□□□ -0.13
Trim54Q9ERP3 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Trim54Q9ERP3 Gm18244-201ENSMUST00000219747 1566 ntBASIC14.24□□□□□ -0.13
Trim54Q9ERP3 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim54Q9ERP3 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim54Q9ERP3 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim54Q9ERP3 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Trim54Q9ERP3 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC14.24□□□□□ -0.13
Trim54Q9ERP3 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim54Q9ERP3 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim54Q9ERP3 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Ube2k-210ENSMUST00000202679 4682 ntTSL 5 BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Gm12241-201ENSMUST00000118330 726 ntBASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Gm28693-202ENSMUST00000190758 331 ntBASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Gm38241-201ENSMUST00000192641 898 ntBASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Gm45865-201ENSMUST00000211815 945 ntBASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Cpeb3-204ENSMUST00000126188 4224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim54Q9ERP3 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Gm8793-201ENSMUST00000183069 1303 ntBASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Zfp109-201ENSMUST00000037448 1935 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Gm15370-201ENSMUST00000117158 253 ntBASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Gm6023-201ENSMUST00000118217 606 ntBASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Gm11637-201ENSMUST00000120601 592 ntBASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Gm13786-201ENSMUST00000122371 333 ntBASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Gm5896-201ENSMUST00000189662 1024 ntBASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Gm38341-201ENSMUST00000195357 515 ntBASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Gm31651-201ENSMUST00000198864 560 ntTSL 3 BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Pdgfc-201ENSMUST00000029652 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Adam11-202ENSMUST00000103081 4620 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim54Q9ERP3 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim54Q9ERP3 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms