Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Rec8-201ENSMUST00000002395 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Gm12454-201ENSMUST00000139119 978 ntTSL 2 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Gm26935-201ENSMUST00000182686 519 ntTSL 5 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Gm27989-201ENSMUST00000184721 107 ntBASIC12.99□□□□□ -0.33
Lima1Q9ERG0 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Gm3695-201ENSMUST00000087222 1009 ntBASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 AC168058.1-201ENSMUST00000219521 2282 ntBASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Lima1Q9ERG0 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Gm24420-201ENSMUST00000176676 59 ntBASIC12.98□□□□□ -0.33
Lima1Q9ERG0 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 AC238811.1-201ENSMUST00000225302 441 ntBASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Itgb4-203ENSMUST00000106458 5779 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Lima1Q9ERG0 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Gm37269-201ENSMUST00000193906 1891 ntBASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Mcph1-201ENSMUST00000039412 4662 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC12.97□□□□□ -0.33
Lima1Q9ERG0 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 AC154846.1-201ENSMUST00000226278 862 ntBASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Lima1Q9ERG0 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 83.1 ms