Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
Ddx56Q9D0R4 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx56Q9D0R4 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Ddx56Q9D0R4 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx56Q9D0R4 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC13.84□□□□□ -0.19
Ddx56Q9D0R4 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx56Q9D0R4 Rdh19-201ENSMUST00000077530 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx56Q9D0R4 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx56Q9D0R4 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx56Q9D0R4 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Ddx56Q9D0R4 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC13.84□□□□□ -0.19
Ddx56Q9D0R4 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Ddx56Q9D0R4 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Ddx56Q9D0R4 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
Ddx56Q9D0R4 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC13.83□□□□□ -0.19
Ddx56Q9D0R4 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
Ddx56Q9D0R4 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
Ddx56Q9D0R4 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Gm9908-201ENSMUST00000211534 448 ntBASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Gm33460-201ENSMUST00000212286 536 ntTSL 5 BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 AC135669.1-202ENSMUST00000216742 540 ntBASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Gm15544-201ENSMUST00000118776 1531 ntBASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Pkdrej-201ENSMUST00000064370 7058 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Ddx56Q9D0R4 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Ankra2-208ENSMUST00000226100 1476 ntBASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Atp9a-204ENSMUST00000109177 3456 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Olfr157-202ENSMUST00000215442 1766 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Gm16202-201ENSMUST00000117532 544 ntBASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Gm11918-201ENSMUST00000121660 179 ntBASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Gm42929-201ENSMUST00000198374 1286 ntBASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Gm6745-201ENSMUST00000199216 526 ntBASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Gm44064-201ENSMUST00000204964 1087 ntBASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Gm45384-201ENSMUST00000210451 277 ntBASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 AC122305.4-201ENSMUST00000216159 1206 ntBASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Gm16372-201ENSMUST00000073088 450 ntBASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Gm9025-201ENSMUST00000122415 1575 ntBASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 AC113060.1-201ENSMUST00000225689 1573 ntBASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC13.82□□□□□ -0.2
Ddx56Q9D0R4 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Gm5912-201ENSMUST00000122282 1438 ntBASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx56Q9D0R4 Gm20683-201ENSMUST00000176751 2790 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms