Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Gm24420-201ENSMUST00000176676 59 ntBASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Gm27989-201ENSMUST00000184721 107 ntBASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 1700080E11Rik-202ENSMUST00000190661 682 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Cpeb4-201ENSMUST00000020543 2312 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 AC124751.1-201ENSMUST00000222716 1408 ntBASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Gm29374-201ENSMUST00000187198 1340 ntTSL 3 BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Cd276-202ENSMUST00000165365 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Ddx28Q9CWT6 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Gm44086-201ENSMUST00000203251 2349 ntBASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Dysf-210ENSMUST00000153860 6525 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Abhd14b-201ENSMUST00000048527 1745 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Ctgf-201ENSMUST00000020171 2398 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Gm11723-201ENSMUST00000155505 466 ntTSL 3 BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Gm18934-201ENSMUST00000216671 1044 ntBASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Slc12a8-202ENSMUST00000117134 2081 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Rtraf-201ENSMUST00000022341 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Cyp2a4-201ENSMUST00000098657 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Ddx28Q9CWT6 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.43
Ddx28Q9CWT6 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.43
Ddx28Q9CWT6 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Txn2-203ENSMUST00000109747 1778 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Alx1-208ENSMUST00000219194 1695 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Gm15240-201ENSMUST00000118156 720 ntBASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Ercc1-203ENSMUST00000160369 1175 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Mir8102-201ENSMUST00000184148 139 ntBASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Gm7390-201ENSMUST00000212452 1216 ntBASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Clps-201ENSMUST00000025062 550 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Ddx28Q9CWT6 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms