Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim47Q8C0E3 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim47Q8C0E3 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Trim47Q8C0E3 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim47Q8C0E3 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim47Q8C0E3 Sumf2-204ENSMUST00000171300 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim47Q8C0E3 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
Trim47Q8C0E3 4930433J02Rik-201ENSMUST00000194719 1386 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Trim47Q8C0E3 Gm38049-201ENSMUST00000195698 1372 ntBASIC14.58□□□□□ -0.08
Trim47Q8C0E3 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Trim47Q8C0E3 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC14.58□□□□□ -0.08
Trim47Q8C0E3 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Ly9-202ENSMUST00000068878 2488 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Gm14371-201ENSMUST00000138925 1518 ntBASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Gm44401-201ENSMUST00000204462 2375 ntBASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 AI593442-203ENSMUST00000213937 5674 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Apaf1-201ENSMUST00000020157 6577 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Trim47Q8C0E3 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Gm996-201ENSMUST00000114217 4881 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Flt4-201ENSMUST00000020617 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Gm13392-201ENSMUST00000117708 150 ntBASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Gm15420-201ENSMUST00000133274 382 ntTSL 3 BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Gm6458-201ENSMUST00000211573 635 ntBASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Snora73a-201ENSMUST00000082453 205 ntBASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Gm9924-202ENSMUST00000192760 2311 ntBASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Gm5620-201ENSMUST00000077991 1348 ntBASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Olfr763-201ENSMUST00000077460 2523 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Rfx7-205ENSMUST00000184015 1554 ntTSL 5 BASIC14.56□□□□□ -0.08
Trim47Q8C0E3 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Mir686-201ENSMUST00000102174 109 ntBASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Gm12539-201ENSMUST00000121549 1098 ntBASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Gm25261-201ENSMUST00000157416 134 ntBASIC14.55□□□□□ -0.08
Trim47Q8C0E3 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC14.55□□□□□ -0.08
Trim47Q8C0E3 AC154276.1-201ENSMUST00000228874 1299 ntBASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Trim47Q8C0E3 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 2766.2 ms