Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC17.94■□□□□ 0.46
Usp40Q8BWR4 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Mir874-201ENSMUST00000104769 76 ntBASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Gm11531-201ENSMUST00000117614 555 ntBASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Gm23363-201ENSMUST00000175024 79 ntBASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Gm5950-201ENSMUST00000213337 772 ntBASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Hspb2-202ENSMUST00000217159 552 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Gm4366-201ENSMUST00000201488 1342 ntBASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Rbak-201ENSMUST00000049861 3335 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Gm42769-201ENSMUST00000198576 1659 ntBASIC17.93■□□□□ 0.46
Usp40Q8BWR4 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Usp40Q8BWR4 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 AC154262.2-201ENSMUST00000224310 2293 ntBASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 AC167669.2-201ENSMUST00000224417 1620 ntBASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Gm25214-201ENSMUST00000104573 129 ntBASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Gm13875-201ENSMUST00000120162 282 ntBASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Gm12291-201ENSMUST00000121627 311 ntBASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Otos-201ENSMUST00000053144 704 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Gm19221-201ENSMUST00000221827 1477 ntBASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Usp40Q8BWR4 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Myl6-202ENSMUST00000217733 1668 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Gm15479-201ENSMUST00000139309 1133 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Gm2546-201ENSMUST00000182630 991 ntBASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Gm9176-201ENSMUST00000219955 1120 ntBASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Gm30238-201ENSMUST00000195528 2603 ntBASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC17.91■□□□□ 0.46
Usp40Q8BWR4 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC17.91■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms