Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Ccdc25-201ENSMUST00000022614 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim27Q62158 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trim27Q62158 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC16.12■□□□□ 0.17
Trim27Q62158 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim27Q62158 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim27Q62158 Gns-201ENSMUST00000040344 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Cdc45-201ENSMUST00000000028 2143 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC16.12■□□□□ 0.17
Trim27Q62158 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim27Q62158 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim27Q62158 Gm45564-201ENSMUST00000210460 530 ntTSL 5 BASIC16.12■□□□□ 0.17
Trim27Q62158 Gm6458-201ENSMUST00000211573 635 ntBASIC16.12■□□□□ 0.17
Trim27Q62158 Gm5035-201ENSMUST00000215581 927 ntBASIC16.12■□□□□ 0.17
Trim27Q62158 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC16.12■□□□□ 0.17
Trim27Q62158 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Trim27Q62158 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trim27Q62158 Mb21d1-201ENSMUST00000034898 3231 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trim27Q62158 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Gm44094-201ENSMUST00000204703 2030 ntBASIC16.11■□□□□ 0.17
Trim27Q62158 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC16.11■□□□□ 0.17
Trim27Q62158 Itsn1-202ENSMUST00000064797 7418 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trim27Q62158 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC16.11■□□□□ 0.17
Trim27Q62158 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Gm15806-201ENSMUST00000120696 955 ntBASIC16.11■□□□□ 0.17
Trim27Q62158 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim27Q62158 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Kitl-204ENSMUST00000218200 564 ntTSL 5 BASIC16.11■□□□□ 0.17
Trim27Q62158 AC155237.1-201ENSMUST00000226196 1279 ntBASIC16.11■□□□□ 0.17
Trim27Q62158 Gm45684-201ENSMUST00000210244 1571 ntBASIC16.11■□□□□ 0.17
Trim27Q62158 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim27Q62158 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trim27Q62158 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Trim27Q62158 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC16.11■□□□□ 0.17
Trim27Q62158 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trim27Q62158 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Trim27Q62158 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Trim27Q62158 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
Trim27Q62158 Cacna2d2-208ENSMUST00000170737 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Actc1-201ENSMUST00000090269 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Trim27Q62158 Phldb1-210ENSMUST00000134465 5244 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Trim27Q62158 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Trim27Q62158 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC16.1■□□□□ 0.17
Trim27Q62158 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Gm14608-201ENSMUST00000120030 1553 ntBASIC16.1■□□□□ 0.17
Trim27Q62158 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim27Q62158 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC16.1■□□□□ 0.17
Trim27Q62158 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Galnt6-202ENSMUST00000159715 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim27Q62158 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Trim27Q62158 Gm12203-201ENSMUST00000118235 598 ntBASIC16.1■□□□□ 0.17
Trim27Q62158 Gm12209-201ENSMUST00000120089 596 ntBASIC16.1■□□□□ 0.17
Trim27Q62158 Gm9002-201ENSMUST00000178437 499 ntBASIC16.1■□□□□ 0.17
Trim27Q62158 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC16.1■□□□□ 0.17
Trim27Q62158 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Pik3cd-204ENSMUST00000105690 4921 ntAPPRIS P4 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Gm15163-201ENSMUST00000120749 1302 ntBASIC16.1■□□□□ 0.17
Trim27Q62158 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim27Q62158 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Trim27Q62158 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC16.1■□□□□ 0.17
Trim27Q62158 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC16.1■□□□□ 0.17
Trim27Q62158 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trim27Q62158 Gm3052-202ENSMUST00000188254 2224 ntBASIC16.1■□□□□ 0.17
Trim27Q62158 Ntrk2-208ENSMUST00000225583 2719 ntBASIC16.1■□□□□ 0.17
Trim27Q62158 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms