Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trav5d-4Q5R1F6 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trav5d-4Q5R1F6 Grk6-203ENSMUST00000224118 1997 ntAPPRIS ALT2 BASIC11.32□□□□□ -0.6
Trav5d-4Q5R1F6 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trav5d-4Q5R1F6 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Trav5d-4Q5R1F6 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Trav5d-4Q5R1F6 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Gm7002-201ENSMUST00000221386 2165 ntBASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Gm10040-201ENSMUST00000080726 1662 ntBASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Gm7488-201ENSMUST00000117148 684 ntBASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Gm11400-201ENSMUST00000120853 1214 ntBASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Gm18624-201ENSMUST00000220966 658 ntBASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 A530072M11Rik-201ENSMUST00000151122 1852 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Arvcf-201ENSMUST00000090103 4620 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Pced1b-201ENSMUST00000059433 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Klhl26-205ENSMUST00000210250 2974 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Trav5d-4Q5R1F6 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Kcnq1-202ENSMUST00000185383 1535 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Lctl-201ENSMUST00000034969 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Kcna6-202ENSMUST00000112242 3464 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gm15371-201ENSMUST00000117057 784 ntBASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gm6161-201ENSMUST00000121942 1102 ntBASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gm6254-201ENSMUST00000168178 1072 ntBASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gm6153-201ENSMUST00000172004 1058 ntBASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gm5866-201ENSMUST00000177881 973 ntBASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 AL593843.1-201ENSMUST00000195891 145 ntBASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gm5641-202ENSMUST00000198699 1080 ntBASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 Tspan3-203ENSMUST00000215906 842 ntTSL 3 BASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 AC155286.1-201ENSMUST00000218632 448 ntBASIC11.3□□□□□ -0.6
Trav5d-4Q5R1F6 CT573086.1-201ENSMUST00000227202 1074 ntBASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 61 ms