Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Gopc-201ENSMUST00000020008 4216 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Col1a1P11087 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
Col1a1P11087 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Gm14999-201ENSMUST00000121039 624 ntBASIC15.2■□□□□ 0.02
Col1a1P11087 Gm16296-201ENSMUST00000159905 325 ntBASIC15.2■□□□□ 0.02
Col1a1P11087 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC15.2■□□□□ 0.02
Col1a1P11087 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 AC107638.1-201ENSMUST00000213690 1061 ntBASIC15.2■□□□□ 0.02
Col1a1P11087 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Col1a1P11087 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC15.19■□□□□ 0.02
Col1a1P11087 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Col1a1P11087 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Col1a1P11087 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC15.19■□□□□ 0.02
Col1a1P11087 Gm14752-201ENSMUST00000120719 2075 ntBASIC15.19■□□□□ 0.02
Col1a1P11087 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Col1a1P11087 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Col1a1P11087 Bcr-201ENSMUST00000164107 6839 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
Col1a1P11087 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC15.19■□□□□ 0.02
Col1a1P11087 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC15.19■□□□□ 0.02
Col1a1P11087 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Col1a1P11087 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
Col1a1P11087 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Col1a1P11087 Gm26559-201ENSMUST00000181939 2481 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Gars-201ENSMUST00000003572 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Flrt2-202ENSMUST00000110117 3223 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
Col1a1P11087 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC15.18■□□□□ 0.02
Col1a1P11087 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC15.18■□□□□ 0.02
Col1a1P11087 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC15.18■□□□□ 0.02
Col1a1P11087 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Col1a1P11087 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Col1a1P11087 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC15.18■□□□□ 0.02
Col1a1P11087 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
Col1a1P11087 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
Col1a1P11087 AC141438.2-201ENSMUST00000215068 271 ntBASIC15.18■□□□□ 0.02
Col1a1P11087 AC135114.1-201ENSMUST00000228682 270 ntBASIC15.18■□□□□ 0.02
Col1a1P11087 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Gm13293-201ENSMUST00000131188 1615 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 AC122197.2-201ENSMUST00000219196 1635 ntBASIC15.18■□□□□ 0.02
Col1a1P11087 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
Col1a1P11087 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Col1a1P11087 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Col1a1P11087 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC15.17■□□□□ 0.02
Col1a1P11087 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC15.17■□□□□ 0.02
Col1a1P11087 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 A630076J17Rik-201ENSMUST00000179399 1358 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Tmem51os1-203ENSMUST00000150202 1667 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Col1a1P11087 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Col1a1P11087 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms