Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Dpysl4-202ENSMUST00000121184 2727 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 AC154725.1-201ENSMUST00000224826 1961 ntBASIC11.93□□□□□ -0.5
Lmx1bO88609 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Gm14350-201ENSMUST00000116642 640 ntBASIC11.93□□□□□ -0.5
Lmx1bO88609 Pla2g10os-201ENSMUST00000141172 174 ntTSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Pyy-204ENSMUST00000177304 551 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC11.93□□□□□ -0.5
Lmx1bO88609 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 S100a8-201ENSMUST00000069927 486 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Gm11562-201ENSMUST00000073853 817 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Pla2g4c-204ENSMUST00000167232 2154 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Pitpnm2-205ENSMUST00000161273 6792 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Plch2-210ENSMUST00000176194 5619 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Gm7899-201ENSMUST00000192935 1897 ntBASIC11.93□□□□□ -0.5
Lmx1bO88609 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Scara5-201ENSMUST00000022610 3794 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Lmx1bO88609 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lmx1bO88609 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Gm18630-201ENSMUST00000222109 1397 ntBASIC11.92□□□□□ -0.5
Lmx1bO88609 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Gm5187-201ENSMUST00000117317 991 ntBASIC11.92□□□□□ -0.5
Lmx1bO88609 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Gm5370-201ENSMUST00000187187 574 ntBASIC11.92□□□□□ -0.5
Lmx1bO88609 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Gm44974-201ENSMUST00000206387 1279 ntBASIC11.92□□□□□ -0.5
Lmx1bO88609 Krtcap2-201ENSMUST00000040888 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC11.92□□□□□ -0.5
Lmx1bO88609 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC11.92□□□□□ -0.5
Lmx1bO88609 Abhd6-203ENSMUST00000225234 1958 ntBASIC11.92□□□□□ -0.5
Lmx1bO88609 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Gm9924-202ENSMUST00000192760 2311 ntBASIC11.92□□□□□ -0.5
Lmx1bO88609 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Kcnk16-202ENSMUST00000225596 2127 ntBASIC11.92□□□□□ -0.5
Lmx1bO88609 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lmx1bO88609 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC11.91□□□□□ -0.5
Lmx1bO88609 Grm6-201ENSMUST00000000631 4291 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Lmx1bO88609 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lmx1bO88609 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lmx1bO88609 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lmx1bO88609 Hspb7-201ENSMUST00000102486 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lmx1bO88609 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Lmx1bO88609 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Lmx1bO88609 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lmx1bO88609 Gm37861-201ENSMUST00000193534 2869 ntBASIC11.91□□□□□ -0.5
Lmx1bO88609 AC164107.1-201ENSMUST00000227730 2161 ntBASIC11.91□□□□□ -0.5
Lmx1bO88609 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC11.91□□□□□ -0.5
Lmx1bO88609 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Lmx1bO88609 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Lmx1bO88609 Gm1335-201ENSMUST00000121653 386 ntBASIC11.91□□□□□ -0.5
Lmx1bO88609 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Lmx1bO88609 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Lmx1bO88609 2610300A13Rik-201ENSMUST00000192930 503 ntBASIC11.91□□□□□ -0.5
Lmx1bO88609 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC11.91□□□□□ -0.5
Lmx1bO88609 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 74.3 ms