Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Gm37324-201ENSMUST00000194500 4504 ntBASIC10.87□□□□□ -0.67
Hmgb3O54879 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC10.86□□□□□ -0.67
Hmgb3O54879 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Zfp608-201ENSMUST00000064763 6112 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC10.86□□□□□ -0.67
Hmgb3O54879 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC10.86□□□□□ -0.67
Hmgb3O54879 Phb2-201ENSMUST00000004375 1318 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Hmgb3O54879 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Hmgb3O54879 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Arid2-201ENSMUST00000096250 8507 ntAPPRIS P1 TSL 5 BASIC10.86□□□□□ -0.67
Hmgb3O54879 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Gm12017-201ENSMUST00000122453 1003 ntBASIC10.86□□□□□ -0.67
Hmgb3O54879 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC10.86□□□□□ -0.67
Hmgb3O54879 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC10.86□□□□□ -0.67
Hmgb3O54879 Gm17971-201ENSMUST00000190239 806 ntBASIC10.86□□□□□ -0.67
Hmgb3O54879 Gm43073-201ENSMUST00000198200 1189 ntBASIC10.86□□□□□ -0.67
Hmgb3O54879 Gm6443-201ENSMUST00000203599 874 ntBASIC10.86□□□□□ -0.67
Hmgb3O54879 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC10.86□□□□□ -0.67
Hmgb3O54879 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Olfr541-201ENSMUST00000080681 1103 ntAPPRIS P1 BASIC10.86□□□□□ -0.67
Hmgb3O54879 C4a-207ENSMUST00000160679 5371 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Mcf2l-217ENSMUST00000145067 5313 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC10.86□□□□□ -0.67
Hmgb3O54879 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC10.86□□□□□ -0.67
Hmgb3O54879 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Hmgb3O54879 Gm45667-201ENSMUST00000210380 1316 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC10.85□□□□□ -0.67
Hmgb3O54879 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Efhd1-201ENSMUST00000027472 1854 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Csnk1a1-202ENSMUST00000163205 3204 ntAPPRIS ALT1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC10.85□□□□□ -0.67
Hmgb3O54879 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC10.85□□□□□ -0.67
Hmgb3O54879 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Degs2-202ENSMUST00000167978 1729 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Gm15427-201ENSMUST00000117288 531 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Gm14140-201ENSMUST00000119999 995 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC10.85□□□□□ -0.67
Hmgb3O54879 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC10.85□□□□□ -0.67
Hmgb3O54879 Gm2651-201ENSMUST00000203560 838 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Gm44945-201ENSMUST00000206764 1187 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Gm18195-201ENSMUST00000207604 706 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Mir125a-201ENSMUST00000083545 68 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC10.85□□□□□ -0.67
Hmgb3O54879 Myo18a-223ENSMUST00000169105 6475 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC10.85□□□□□ -0.67
Hmgb3O54879 Gm15459-201ENSMUST00000117405 1941 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Gm8355-201ENSMUST00000177767 1941 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC10.85□□□□□ -0.67
Hmgb3O54879 Scn10a-204ENSMUST00000214408 5877 ntAPPRIS P2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Gm42829-201ENSMUST00000198417 2585 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Tmed9-203ENSMUST00000224741 1450 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Hmgb3O54879 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC10.85□□□□□ -0.67
Hmgb3O54879 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC10.85□□□□□ -0.67
Hmgb3O54879 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Ivns1abp-201ENSMUST00000023918 3511 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Cspg4-201ENSMUST00000035661 8121 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Col4a4-201ENSMUST00000087050 10108 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Hnrnpk-232ENSMUST00000225674 2704 ntBASIC10.85□□□□□ -0.67
Hmgb3O54879 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC10.85□□□□□ -0.67
Hmgb3O54879 Cacna1c-226ENSMUST00000219833 7591 ntTSL 5 BASIC10.84□□□□□ -0.67
Hmgb3O54879 Tacr1-201ENSMUST00000032122 5021 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Rac1-201ENSMUST00000080537 4159 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Hmgb3O54879 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 212.2 ms