Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Pcdh1F7BJK1 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Pcdh1F7BJK1 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Pcdh1F7BJK1 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Pcdh1F7BJK1 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Pcdh1F7BJK1 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Pcdh1F7BJK1 Plekha1-202ENSMUST00000075181 2301 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Pcdh1F7BJK1 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Pcdh1F7BJK1 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Pcdh1F7BJK1 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Gm9025-201ENSMUST00000122415 1575 ntBASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 AC113060.1-201ENSMUST00000225689 1573 ntBASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Gm13323-201ENSMUST00000120245 1151 ntBASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Gm13616-201ENSMUST00000120600 222 ntBASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Gm44344-201ENSMUST00000200287 129 ntBASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Gm17870-201ENSMUST00000219489 1174 ntBASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Zfp125-201ENSMUST00000079237 2488 ntBASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Gm38037-201ENSMUST00000192600 1624 ntBASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Pcdh1F7BJK1 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Zkscan3-207ENSMUST00000223831 2101 ntBASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 AC123834.1-201ENSMUST00000225346 2043 ntBASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Fbxl12-203ENSMUST00000131128 4182 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Prok2-203ENSMUST00000101120 1450 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Gm5161-201ENSMUST00000075243 853 ntBASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 AC122840.1-201ENSMUST00000220915 3334 ntBASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Aco1-201ENSMUST00000102973 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Xpr1-203ENSMUST00000111775 4094 ntTSL 5 BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Brms1-201ENSMUST00000116567 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Pcdh1F7BJK1 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
Pcdh1F7BJK1 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.51
Pcdh1F7BJK1 Gm43045-201ENSMUST00000198725 2095 ntBASIC11.83□□□□□ -0.51
Pcdh1F7BJK1 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Pcdh1F7BJK1 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Pcdh1F7BJK1 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Pcdh1F7BJK1 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms