Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm11597-201ENSMUST00000121423 964 ntBASIC15.36■□□□□ 0.05
Scn11aQ9R053 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Mir6958-201ENSMUST00000184207 73 ntBASIC15.36■□□□□ 0.05
Scn11aQ9R053 AC163667.3-201ENSMUST00000225774 222 ntBASIC15.36■□□□□ 0.05
Scn11aQ9R053 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Scn11aQ9R053 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Cyp2b10-201ENSMUST00000005477 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC15.35■□□□□ 0.05
Scn11aQ9R053 AC161537.1-201ENSMUST00000226199 1015 ntBASIC15.35■□□□□ 0.05
Scn11aQ9R053 CT025533.2-201ENSMUST00000228715 1248 ntBASIC15.35■□□□□ 0.05
Scn11aQ9R053 Ndufb4-201ENSMUST00000023514 971 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Ccdc28a-202ENSMUST00000080860 1190 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Slc25a25-203ENSMUST00000113307 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Scn11aQ9R053 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC15.34■□□□□ 0.05
Scn11aQ9R053 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm8494-201ENSMUST00000178171 1233 ntBASIC15.34■□□□□ 0.05
Scn11aQ9R053 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm8856-201ENSMUST00000185254 1144 ntBASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm10176-201ENSMUST00000159707 2264 ntBASIC15.34■□□□□ 0.05
Scn11aQ9R053 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC15.34■□□□□ 0.05
Scn11aQ9R053 R3hdm2-212ENSMUST00000166820 4281 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm12314-201ENSMUST00000118104 538 ntBASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm15703-201ENSMUST00000120250 880 ntBASIC15.34■□□□□ 0.05
Scn11aQ9R053 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm20426-201ENSMUST00000173657 440 ntBASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm28450-201ENSMUST00000187349 638 ntBASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm45691-201ENSMUST00000206905 1120 ntBASIC15.34■□□□□ 0.05
Scn11aQ9R053 Gm8712-201ENSMUST00000221090 701 ntBASIC15.34■□□□□ 0.05
Scn11aQ9R053 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Scn11aQ9R053 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Scn11aQ9R053 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Scn11aQ9R053 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Scn11aQ9R053 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC15.33■□□□□ 0.05
Scn11aQ9R053 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Scn11aQ9R053 Esam-201ENSMUST00000002011 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Scn11aQ9R053 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Scn11aQ9R053 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Gm19385-201ENSMUST00000214714 1813 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC15.33■□□□□ 0.04
Scn11aQ9R053 Gm9279-201ENSMUST00000223175 1606 ntBASIC15.33■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms