Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Tada3-203ENSMUST00000099118 1282 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sh3rf1Q69ZI1 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sh3rf1Q69ZI1 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sh3rf1Q69ZI1 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sh3rf1Q69ZI1 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sh3rf1Q69ZI1 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sh3rf1Q69ZI1 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Sh3rf1Q69ZI1 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sh3rf1Q69ZI1 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
Sh3rf1Q69ZI1 Gm17435-202ENSMUST00000212699 1998 ntBASIC13.38□□□□□ -0.27
Sh3rf1Q69ZI1 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Sh3rf1Q69ZI1 Gm42863-201ENSMUST00000197875 2958 ntBASIC13.38□□□□□ -0.27
Sh3rf1Q69ZI1 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Kif5c-201ENSMUST00000028102 6856 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Rnf17-202ENSMUST00000223627 2077 ntBASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Gm16175-201ENSMUST00000128181 248 ntTSL 3 BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Gm12786-201ENSMUST00000129617 644 ntTSL 3 BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Gm5354-201ENSMUST00000182417 973 ntBASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Gm21470-201ENSMUST00000187680 696 ntBASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Ube2f-210ENSMUST00000191368 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Polr2h-201ENSMUST00000021405 950 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 AC238811.3-201ENSMUST00000225422 709 ntBASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Dpysl5-203ENSMUST00000114729 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Gm28323-201ENSMUST00000186817 2499 ntBASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Lamc2-201ENSMUST00000027753 5164 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sh3rf1Q69ZI1 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Gosr2-202ENSMUST00000107013 1044 ntTSL 2 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Gm15824-201ENSMUST00000119516 955 ntBASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Gm12341-201ENSMUST00000119724 503 ntBASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Gm12960-201ENSMUST00000120017 1066 ntBASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Gm15806-201ENSMUST00000120696 955 ntBASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Cpne8-201ENSMUST00000014777 697 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Gm17409-201ENSMUST00000167423 962 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Rab10os-207ENSMUST00000179924 823 ntTSL 5 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 A330069E16Rik-201ENSMUST00000181191 887 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 CT030161.3-201ENSMUST00000218235 367 ntTSL 3 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 AC154806.6-201ENSMUST00000228192 202 ntBASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Hdhd3-201ENSMUST00000037820 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Gm26577-201ENSMUST00000180680 2184 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Thap2-202ENSMUST00000218842 4970 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sh3rf1Q69ZI1 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC13.36□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 73.9 ms