Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC12.67□□□□□ -0.38
ClpbQ60649 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ClpbQ60649 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
ClpbQ60649 Plcd3-201ENSMUST00000103077 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ClpbQ60649 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ClpbQ60649 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
ClpbQ60649 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ClpbQ60649 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ClpbQ60649 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC12.67□□□□□ -0.38
ClpbQ60649 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ClpbQ60649 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ClpbQ60649 Ssr1-203ENSMUST00000225246 1825 ntBASIC12.67□□□□□ -0.38
ClpbQ60649 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
ClpbQ60649 Nrg1-210ENSMUST00000208488 2403 ntAPPRIS P5 TSL 5 BASIC12.67□□□□□ -0.38
ClpbQ60649 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
ClpbQ60649 Gm43273-201ENSMUST00000199649 2594 ntBASIC12.67□□□□□ -0.38
ClpbQ60649 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC12.67□□□□□ -0.38
ClpbQ60649 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
ClpbQ60649 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC12.66□□□□□ -0.38
ClpbQ60649 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Gm5779-202ENSMUST00000219564 1477 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC12.66□□□□□ -0.38
ClpbQ60649 Gm12928-201ENSMUST00000117115 573 ntBASIC12.66□□□□□ -0.38
ClpbQ60649 Gm13689-201ENSMUST00000119360 685 ntBASIC12.66□□□□□ -0.38
ClpbQ60649 Gm15824-201ENSMUST00000119516 955 ntBASIC12.66□□□□□ -0.38
ClpbQ60649 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC12.66□□□□□ -0.38
ClpbQ60649 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Gm2495-201ENSMUST00000191160 466 ntBASIC12.66□□□□□ -0.38
ClpbQ60649 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.66□□□□□ -0.38
ClpbQ60649 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.66□□□□□ -0.38
ClpbQ60649 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Gm17330-201ENSMUST00000221047 165 ntBASIC12.66□□□□□ -0.38
ClpbQ60649 AC130829.1-201ENSMUST00000221548 494 ntBASIC12.66□□□□□ -0.38
ClpbQ60649 Fuom-201ENSMUST00000026539 685 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Gm43650-201ENSMUST00000197337 1382 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Gm30214-201ENSMUST00000199271 1383 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC12.66□□□□□ -0.38
ClpbQ60649 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
ClpbQ60649 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Gsdma3-201ENSMUST00000073295 1477 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Pik3cd-201ENSMUST00000038859 4905 ntAPPRIS ALT1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Ltbp4-204ENSMUST00000118961 3444 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Bscl2-203ENSMUST00000159634 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
ClpbQ60649 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC12.65□□□□□ -0.38
ClpbQ60649 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Gm4984-201ENSMUST00000115987 360 ntBASIC12.65□□□□□ -0.38
ClpbQ60649 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.65□□□□□ -0.38
ClpbQ60649 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
ClpbQ60649 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC12.65□□□□□ -0.38
ClpbQ60649 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC12.65□□□□□ -0.38
ClpbQ60649 Gm6244-201ENSMUST00000178732 841 ntBASIC12.65□□□□□ -0.38
ClpbQ60649 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
ClpbQ60649 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Gm37047-201ENSMUST00000191992 533 ntTSL 5 BASIC12.65□□□□□ -0.38
ClpbQ60649 Gm44397-201ENSMUST00000195950 113 ntBASIC12.65□□□□□ -0.38
ClpbQ60649 1700067P10Rik-201ENSMUST00000022028 794 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC12.65□□□□□ -0.38
ClpbQ60649 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Alkbh7-202ENSMUST00000074141 736 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Gm10176-201ENSMUST00000159707 2264 ntBASIC12.65□□□□□ -0.38
ClpbQ60649 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC12.65□□□□□ -0.38
ClpbQ60649 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 AC122314.1-201ENSMUST00000223056 2239 ntBASIC12.65□□□□□ -0.38
ClpbQ60649 Acbd5-213ENSMUST00000227809 1986 ntAPPRIS ALT2 BASIC12.65□□□□□ -0.38
ClpbQ60649 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
ClpbQ60649 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
ClpbQ60649 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
ClpbQ60649 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms