Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Stau1-201ENSMUST00000049412 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
Usp4P35123 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Gm18263-201ENSMUST00000220846 1928 ntBASIC13.82□□□□□ -0.2
Usp4P35123 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Usp4P35123 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Usp4P35123 Gm15460-201ENSMUST00000118147 391 ntBASIC13.82□□□□□ -0.2
Usp4P35123 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC13.82□□□□□ -0.2
Usp4P35123 Med10-204ENSMUST00000221893 815 ntTSL 2 BASIC13.82□□□□□ -0.2
Usp4P35123 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Pdzd11-202ENSMUST00000059099 1041 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Usp4P35123 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Gm5466-201ENSMUST00000119395 1890 ntBASIC13.82□□□□□ -0.2
Usp4P35123 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Usp4P35123 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC13.82□□□□□ -0.2
Usp4P35123 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Usp4P35123 Gm13859-201ENSMUST00000119936 1423 ntBASIC13.81□□□□□ -0.2
Usp4P35123 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Myg1-202ENSMUST00000113682 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC13.81□□□□□ -0.2
Usp4P35123 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Usp4P35123 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC13.81□□□□□ -0.2
Usp4P35123 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Gm9946-202ENSMUST00000162741 1580 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC13.81□□□□□ -0.2
Usp4P35123 Gm15770-201ENSMUST00000117498 584 ntBASIC13.81□□□□□ -0.2
Usp4P35123 Gm14928-201ENSMUST00000120198 477 ntBASIC13.81□□□□□ -0.2
Usp4P35123 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Usp4P35123 AC153872.1-201ENSMUST00000199539 128 ntBASIC13.81□□□□□ -0.2
Usp4P35123 Gm9229-201ENSMUST00000222777 126 ntBASIC13.81□□□□□ -0.2
Usp4P35123 AC156016.3-201ENSMUST00000228623 344 ntBASIC13.81□□□□□ -0.2
Usp4P35123 Mzt2-201ENSMUST00000023351 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Car5a-201ENSMUST00000057653 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Usp4P35123 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Usp4P35123 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Usp4P35123 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Foxred2-202ENSMUST00000117725 4347 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Usp4P35123 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Pxn-202ENSMUST00000086523 2667 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
Usp4P35123 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Usp4P35123 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
Usp4P35123 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC13.8□□□□□ -0.2
Usp4P35123 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC13.8□□□□□ -0.2
Usp4P35123 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC13.8□□□□□ -0.2
Usp4P35123 Gm18187-201ENSMUST00000196476 984 ntBASIC13.8□□□□□ -0.2
Usp4P35123 Gm6745-201ENSMUST00000199216 526 ntBASIC13.8□□□□□ -0.2
Usp4P35123 Gm43703-201ENSMUST00000200523 763 ntBASIC13.8□□□□□ -0.2
Usp4P35123 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC13.8□□□□□ -0.2
Usp4P35123 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC13.8□□□□□ -0.2
Usp4P35123 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Usp4P35123 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Vit-201ENSMUST00000024880 2720 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC13.8□□□□□ -0.2
Usp4P35123 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Gatd1-201ENSMUST00000106008 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Pcdhgb1-201ENSMUST00000192931 4723 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Usp4P35123 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC13.8□□□□□ -0.2
Usp4P35123 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Usp4P35123 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Usp4P35123 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usp4P35123 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Usp4P35123 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Usp4P35123 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Usp4P35123 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms