Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Msx1P13297 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Psmd8-207ENSMUST00000209034 1983 ntTSL 2 BASIC12.6□□□□□ -0.39
Msx1P13297 Gm26878-201ENSMUST00000181778 1644 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
Msx1P13297 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC12.6□□□□□ -0.39
Msx1P13297 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Gm5133-201ENSMUST00000118940 1255 ntBASIC12.6□□□□□ -0.39
Msx1P13297 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC12.6□□□□□ -0.39
Msx1P13297 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Msx1P13297 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC12.6□□□□□ -0.39
Msx1P13297 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC12.6□□□□□ -0.39
Msx1P13297 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC12.6□□□□□ -0.39
Msx1P13297 Gm45880-201ENSMUST00000213041 853 ntBASIC12.6□□□□□ -0.39
Msx1P13297 AC129597.1-201ENSMUST00000223046 1234 ntBASIC12.6□□□□□ -0.39
Msx1P13297 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Gm17383-201ENSMUST00000078739 1041 ntBASIC12.6□□□□□ -0.39
Msx1P13297 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC12.6□□□□□ -0.39
Msx1P13297 Cpt2-201ENSMUST00000030345 2372 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
Msx1P13297 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Matn2-206ENSMUST00000228570 2798 ntBASIC12.6□□□□□ -0.39
Msx1P13297 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
Msx1P13297 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Plekhb1-201ENSMUST00000079176 2079 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Msx1P13297 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.6□□□□□ -0.39
Msx1P13297 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Gm14455-201ENSMUST00000138288 2146 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Msx1P13297 Xkr5-202ENSMUST00000095438 2838 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Arhgef4-201ENSMUST00000047664 3287 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
Msx1P13297 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Gm12485-201ENSMUST00000119641 291 ntBASIC12.59□□□□□ -0.39
Msx1P13297 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 1700027A07Rik-201ENSMUST00000150472 458 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Ube4bos1-202ENSMUST00000151896 1286 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Gm5656-201ENSMUST00000171020 1096 ntBASIC12.59□□□□□ -0.39
Msx1P13297 Gm43822-201ENSMUST00000200285 476 ntBASIC12.59□□□□□ -0.39
Msx1P13297 Gm3961-201ENSMUST00000204425 994 ntBASIC12.59□□□□□ -0.39
Msx1P13297 Gm30906-201ENSMUST00000219578 535 ntTSL 3 BASIC12.59□□□□□ -0.39
Msx1P13297 CT485787.1-201ENSMUST00000225617 968 ntBASIC12.59□□□□□ -0.39
Msx1P13297 AC154252.1-201ENSMUST00000226041 473 ntBASIC12.59□□□□□ -0.39
Msx1P13297 Adamts7-208ENSMUST00000167122 5338 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Msx1P13297 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Apol7a-201ENSMUST00000010745 1431 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Pltp-203ENSMUST00000109317 1575 ntTSL 5 BASIC12.59□□□□□ -0.39
Msx1P13297 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Msx1P13297 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC12.59□□□□□ -0.39
Msx1P13297 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Msx1P13297 Rnf152-202ENSMUST00000172299 8406 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Msx1P13297 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.39
Msx1P13297 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Msx1P13297 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Msx1P13297 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.39
Msx1P13297 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.39
Msx1P13297 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC12.58□□□□□ -0.39
Msx1P13297 Gm29151-201ENSMUST00000196669 2513 ntTSL 5 BASIC12.58□□□□□ -0.4
Msx1P13297 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Gm37015-201ENSMUST00000192763 1521 ntBASIC12.58□□□□□ -0.4
Msx1P13297 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
Msx1P13297 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Plcd1-203ENSMUST00000214470 2706 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Plod2-201ENSMUST00000070522 3649 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Gm15770-201ENSMUST00000117498 584 ntBASIC12.58□□□□□ -0.4
Msx1P13297 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC12.58□□□□□ -0.4
Msx1P13297 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC12.58□□□□□ -0.4
Msx1P13297 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 4933403O08Rik-201ENSMUST00000132037 999 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Gm22331-201ENSMUST00000158066 136 ntBASIC12.58□□□□□ -0.4
Msx1P13297 Adam3-210ENSMUST00000171611 1202 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Msx1P13297 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 80.8 ms